PDB entry 6iyv

View 6iyv on RCSB PDB site
Description: Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ertapenem adduct
Class: transferase
Keywords: LD-TRANSPEPTIDASE, PEPTIDOGLYCAN SYNTHESIS ENZYME, beta-lactam binding, TRANSFERASE
Deposited on 2018-12-17, released 2019-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-02-27, with a file datestamp of 2019-02-22.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L,D-transpeptidase 2
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
    Gene: ldtB, lppS, Rv2518c, RVBD_2518c, P425_02624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6iyva1, d6iyva2
  • Chain 'B':
    Compound: L,D-transpeptidase 2
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
    Gene: ldtB, lppS, Rv2518c, RVBD_2518c, P425_02624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6iyvb1, d6iyvb2
  • Heterogens: 2RG, GOL, PEG, SO4, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6iyvA (A:)
snaqltfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppv
egafywlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviat
addntkiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspn
gyrtdvdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdive
vvntvggtlpgidglgdwnipwdqwragnaka

    Sequence, based on observed residues (ATOM records): (download) 
    >6iyvA (A:)
ltfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppvegaf
ywlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviataddn
tkiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspngyrt
dvdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdivevvnt
vggtlpgidglgdwnipwdqwragnak

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6iyvB (B:)
snaqltfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppv
egafywlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviat
addntkiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspn
gyrtdvdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdive
vvntvggtlpgidglgdwnipwdqwragnaka

    Sequence, based on observed residues (ATOM records): (download) 
    >6iyvB (B:)
tfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppvegafy
wlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviataddnt
kiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspngyrtd
vdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdivevvntv
ggtlpgidglgdwnipwdqwragn