PDB entry 6ir1

View 6ir1 on RCSB PDB site
Description: Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution
Class: fluorescent protein
Keywords: Complex, Nanobody, red fluorescent protein mCherry, LaM4, FLUORESCENT PROTEIN
Deposited on 2018-11-09, released 2019-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MCherry fluorescent protein
    Species: Anaplasma marginale [TaxId:770]
    Gene: mCherry
    Database cross-references and differences (RAF-indexed):
    • Uniprot X5DSL3
      • chromophore (71)
    Domains in SCOPe 2.08: d6ir1a_
  • Chain 'B':
    Compound: mCherry's nanobody LaM4
    Species: Camelus bactrianus [TaxId:9837]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IR1 (0-End)
    Domains in SCOPe 2.08: d6ir1b_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ir1A (A:)
gmvskgeednmaiikefmrfkvhmegsvnghefeiegegegrpyegtqtaklkvtkggpl
pfawdilspqfmygskayvkhpadipdylklsfpegfkwervmnfedggvvtvtqdsslq
dgefiykvklrgtnfpsdgpvmqkktmgweassermypedgalkgeikqrlklkdgghyd
aevkttykakkpvqlpgaynvniklditshnedytiveqyeraegrhstggmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ir1A (A:)
aiikefmrfkvhmegsvnghefeiegegegrpyegtqtaklkvtkggplpfawdilspqf
mygskayvkhpadipdylklsfpegfkwervmnfedggvvtvtqdsslqdgefiykvklr
gtnfpsdgpvmqkktmgweassermypedgalkgeikqrlklkdgghydaevkttykakk
pvqlpgaynvniklditshnedytiveqyeraegrhstg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ir1B (B:)
aqvqlvesggslvqpggslrlscaasgrfaesssmgwfrqapgkerefvaaiswsggatn
yadsakgrftlsrdntkntvylqmnslkpddtavyycaanlgnyissnqrlygywgqgtq
vtvsspftle

    Sequence, based on observed residues (ATOM records): (download) 
    >6ir1B (B:)
aqvqlvesggslvqpggslrlscaasgrfaesssmgwfrqapgkerefvaaiswsggatn
yadsakgrftlsrdntkntvylqmnslkpddtavyycaanlgnyissnqrlygywgqgtq
vtvs