PDB entry 6hm2

View 6hm2 on RCSB PDB site
Description: Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10
Class: transport protein
Keywords: periplasmic binding protein, ABC transporter, TRANSPORT PROTEIN
Deposited on 2018-09-12, released 2018-12-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-12-26, with a file datestamp of 2018-12-21.
Experiment type: XRAY
Resolution: 1.74 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Agropine permease
    Species: Agrobacterium tumefaciens LBA4213 (Ach5) [TaxId:1435057]
    Gene: agtB, X971_5368
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8FRA6 (22-End)
      • expression tag (18-21)
    Domains in SCOPe 2.07: d6hm2a1, d6hm2a2
  • Chain 'B':
    Compound: Agropine permease
    Species: Agrobacterium tumefaciens LBA4213 (Ach5) [TaxId:1435057]
    Gene: agtB, X971_5368
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8FRA6 (22-334)
      • expression tag (18-21)
    Domains in SCOPe 2.07: d6hm2b1, d6hm2b2
  • Chain 'C':
    Compound: Agropine permease
    Species: Agrobacterium tumefaciens LBA4213 (Ach5) [TaxId:1435057]
    Gene: agtB, X971_5368
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8FRA6 (22-End)
      • expression tag (20-21)
    Domains in SCOPe 2.07: d6hm2c1, d6hm2c2
  • Chain 'D':
    Compound: Agropine permease
    Species: Agrobacterium tumefaciens LBA4213 (Ach5) [TaxId:1435057]
    Gene: agtB, X971_5368
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8FRA6 (22-End)
      • expression tag (20-21)
    Domains in SCOPe 2.07: d6hm2d1, d6hm2d2
  • Chain 'E':
    Compound: Agropine permease
    Species: Agrobacterium tumefaciens LBA4213 (Ach5) [TaxId:1435057]
    Gene: agtB, X971_5368
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8FRA6 (22-End)
      • expression tag (21)
    Domains in SCOPe 2.07: d6hm2e1, d6hm2e2
  • Heterogens: G9Z, EDO, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6hm2A (A:)
mgsshhhhhhssglvprgshmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgt
gyakvkamvesgnvtwdvisaespafasevkdgllepidysvvkadnvpenfrtkygvgy
mvfgtnlawnkdkfpngvtpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypld
vkralkvidrvkdqvigykgasdiqalmqqgeadivyagtgriknaikaganwsyswega
ladteywavpkgaphaaeamkfinfavqaepqaeltrviaygptnvdalrlldpavakdl
psypanaklgavlnskwwndnydavkaewttyimqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hm2A (A:)
shmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgtgyakvkamvesgnvtwdv
isaespafasevkdgllepidysvvkadnvpenfrtkygvgymvfgtnlawnkdkfpngv
tpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypldvkralkvidrvkdqvigy
kgasdiqalmqqgeadivyagtgriknaikaganwsyswegaladteywavpkgaphaae
amkfinfavqaepqaeltrviaygptnvdalrlldpavakdlpsypanaklgavlnskww
ndnydavkaewttyim

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6hm2B (B:)
mgsshhhhhhssglvprgshmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgt
gyakvkamvesgnvtwdvisaespafasevkdgllepidysvvkadnvpenfrtkygvgy
mvfgtnlawnkdkfpngvtpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypld
vkralkvidrvkdqvigykgasdiqalmqqgeadivyagtgriknaikaganwsyswega
ladteywavpkgaphaaeamkfinfavqaepqaeltrviaygptnvdalrlldpavakdl
psypanaklgavlnskwwndnydavkaewttyimqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hm2B (B:)
shmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgtgyakvkamvesgnvtwdv
isaespafasevkdgllepidysvvkadnvpenfrtkygvgymvfgtnlawnkdkfpngv
tpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypldvkralkvidrvkdqvigy
kgasdiqalmqqgeadivyagtgriknaikaganwsyswegaladteywavpkgaphaae
amkfinfavqaepqaeltrviaygptnvdalrlldpavakdlpsypanaklgavlnskww
ndnydavkaewttyimq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6hm2C (C:)
mgsshhhhhhssglvprgshmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgt
gyakvkamvesgnvtwdvisaespafasevkdgllepidysvvkadnvpenfrtkygvgy
mvfgtnlawnkdkfpngvtpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypld
vkralkvidrvkdqvigykgasdiqalmqqgeadivyagtgriknaikaganwsyswega
ladteywavpkgaphaaeamkfinfavqaepqaeltrviaygptnvdalrlldpavakdl
psypanaklgavlnskwwndnydavkaewttyimqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hm2C (C:)
mmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgtgyakvkamvesgnvtwdvis
aespafasevkdgllepidysvvkadnvpenfrtkygvgymvfgtnlawnkdkfpngvtp
aqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypldvkralkvidrvkdqvigykg
asdiqalmqqgeadivyagtgriknaikaganwsyswegaladteywavpkgaphaaeam
kfinfavqaepqaeltrviaygptnvdalrlldpavakdlpsypanaklgavlnskwwnd
nydavkaewttyim

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6hm2D (D:)
mgsshhhhhhssglvprgshmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgt
gyakvkamvesgnvtwdvisaespafasevkdgllepidysvvkadnvpenfrtkygvgy
mvfgtnlawnkdkfpngvtpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypld
vkralkvidrvkdqvigykgasdiqalmqqgeadivyagtgriknaikaganwsyswega
ladteywavpkgaphaaeamkfinfavqaepqaeltrviaygptnvdalrlldpavakdl
psypanaklgavlnskwwndnydavkaewttyimqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hm2D (D:)
mmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgtgyakvkamvesgnvtwdvis
aespafasevkdgllepidysvvkadnvpenfrtkygvgymvfgtnlawnkdkfpngvtp
aqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypldvkralkvidrvkdqvigykg
asdiqalmqqgeadivyagtgriknaikaganwsyswegaladteywavpkgaphaaeam
kfinfavqaepqaeltrviaygptnvdalrlldpavakdlpsypanaklgavlnskwwnd
nydavkaewttyim

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6hm2E (E:)
mgsshhhhhhssglvprgshmmadlvissyggsfqdaqtkayfdpyakasgvkvtgttgt
gyakvkamvesgnvtwdvisaespafasevkdgllepidysvvkadnvpenfrtkygvgy
mvfgtnlawnkdkfpngvtpaqffdpnvkgrrvlpsdatyslefalmgdgvkpadlypld
vkralkvidrvkdqvigykgasdiqalmqqgeadivyagtgriknaikaganwsyswega
ladteywavpkgaphaaeamkfinfavqaepqaeltrviaygptnvdalrlldpavakdl
psypanaklgavlnskwwndnydavkaewttyimqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hm2E (E:)
madlvissyggsfqdaqtkayfdpyakasgvkvtgttgtgyakvkamvesgnvtwdvisa
espafasevkdgllepidysvvkadnvpenfrtkygvgymvfgtnlawnkdkfpngvtpa
qffdpnvkgrrvlpsdatyslefalmgdgvkpadlypldvkralkvidrvkdqvigykga
sdiqalmqqgeadivyagtgriknaikaganwsyswegaladteywavpkgaphaaeamk
finfavqaepqaeltrviaygptnvdalrlldpavakdlpsypanaklgavlnskwwndn
ydavkaewttyi