PDB entry 5wrf

View 5wrf on RCSB PDB site
Description: Crystal structure of dodecameric type II dehydroquinate dehydratase from Acinetobacter baumannii with unexplained connecting electron density between free cysteine residues of molecular pairs
Class: lyase
Keywords: lyase
Deposited on 2016-12-01, released 2016-12-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-12-21, with a file datestamp of 2016-12-16.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfa_
• Chain 'B':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfb_
• Chain 'C':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfc_
• Chain 'D':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfd_
• Chain 'E':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfe_
• Chain 'F':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrff_
• Chain 'G':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfg_
• Chain 'H':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfh_
• Chain 'I':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfi_
• Chain 'J':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfj_
• Chain 'K':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfk_
• Chain 'L':
  Compound: 3-dehydroquinate dehydratase
  Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
  Gene: aroQ, A1S_2009
  Database cross-references and differences (RAF-indexed):
  • Uniprot A3M692 (0-144)
  Domains in SCOPe 2.07: d5wrfl_
• Heterogens: EDO, HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfA (A:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfB (B:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfC (C:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfD (D:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfE (E:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfF (F:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfG (G:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfH (H:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfI (I:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfJ (J:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfK (K:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq
  

  
  
• Chain 'L':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5wrfL (L:)
  sstilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdr
  ihqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdk
  aigvicglgakgysfaldyaiekiq