PDB entry 5vg3

View 5vg3 on RCSB PDB site
Description: Structure of Oxalate Decarboxylase from Bacillus subtilis at pH 4.6
Class: lyase
Keywords: oxalate decarboxylase, Bacillus subtilis, LYASE
Deposited on 2017-04-10, released 2017-10-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Oxalate decarboxylase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: B4417_3145
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5vg3a_
  • Chain 'B':
    Compound: Oxalate decarboxylase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: B4417_3145
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5vg3b_
  • Chain 'C':
    Compound: Oxalate decarboxylase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: B4417_3145
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5vg3c_
  • Heterogens: ACT, GOL, MN, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5vg3A (A:)
mkkqndipqpirgdkgatvkiprnierdrqnpdmlvppetdhgtvsnmkfsfsdthnrle
kggyarevtvrelpisenlasvnmrlkpgairelhwhkeaewaymiygsarvtivdekgr
sfiddvgegdlwyfpsglphsiqaleegaefllvfddgsfsenstfqltdwlahtpkevi
aanfgvtkeeisnlpgkekyifenqlpgslkddivegpngevpypftyrlleqepieseg
gkvyiadstnfkvsktiasalvtvepgamrelhwhpnthewqyyisgkarmtvfasdgha
rtfnyqagdvgyvpfamghyvenigdeplvfleifkddhyadvslnqwlamlpetfvqah
ldlgkdftdvlskekhpvvkkk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vg3B (B:)
mkkqndipqpirgdkgatvkiprnierdrqnpdmlvppetdhgtvsnmkfsfsdthnrle
kggyarevtvrelpisenlasvnmrlkpgairelhwhkeaewaymiygsarvtivdekgr
sfiddvgegdlwyfpsglphsiqaleegaefllvfddgsfsenstfqltdwlahtpkevi
aanfgvtkeeisnlpgkekyifenqlpgslkddivegpngevpypftyrlleqepieseg
gkvyiadstnfkvsktiasalvtvepgamrelhwhpnthewqyyisgkarmtvfasdgha
rtfnyqagdvgyvpfamghyvenigdeplvfleifkddhyadvslnqwlamlpetfvqah
ldlgkdftdvlskekhpvvkkk

    Sequence, based on observed residues (ATOM records): (download) 
    >5vg3B (B:)
dipqpirgdkgatvkiprnierdrqnpdmlvppetdhgtvsnmkfsfsdthnrlekggya
revtvrelpisenlasvnmrlkpgairelhwhkeaewaymiygsarvtivdekgrsfidd
vgegdlwyfpsglphsiqaleegaefllvfddgsfsenstfqltdwlahtpkeviaanfg
vtkeeisnlpgkekyifenqlpgslkddivegpngevpypftyrlleqepieseggkvyi
adstnfkvsktiasalvtvepgamrelhwhpnthewqyyisgkarmtvfasdghartfny
qagdvgyvpfamghyvenigdeplvfleifkddhyadvslnqwlamlpetfvqahldlgk
dftdvlskekhpvvkk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5vg3C (C:)
mkkqndipqpirgdkgatvkiprnierdrqnpdmlvppetdhgtvsnmkfsfsdthnrle
kggyarevtvrelpisenlasvnmrlkpgairelhwhkeaewaymiygsarvtivdekgr
sfiddvgegdlwyfpsglphsiqaleegaefllvfddgsfsenstfqltdwlahtpkevi
aanfgvtkeeisnlpgkekyifenqlpgslkddivegpngevpypftyrlleqepieseg
gkvyiadstnfkvsktiasalvtvepgamrelhwhpnthewqyyisgkarmtvfasdgha
rtfnyqagdvgyvpfamghyvenigdeplvfleifkddhyadvslnqwlamlpetfvqah
ldlgkdftdvlskekhpvvkkk

    Sequence, based on observed residues (ATOM records): (download) 
    >5vg3C (C:)
dipqpirgdkgatvkiprnierdrqnpdmlvppetdhgtvsnmkfsfsdthnrlekggya
revtvrelpisenlasvnmrlkpgairelhwhkeaewaymiygsarvtivdekgrsfidd
vgegdlwyfpsglphsiqaleegaefllvfddgsfsenstfqltdwlahtpkeviaanfg
vtkeeisnlpgkekyifenqlpgslkddivegpngevpypftyrlleqepieseggkvyi
adstnfkvsktiasalvtvepgamrelhwhpnthewqyyisgkarmtvfasdghartfny
qagdvgyvpfamghyvenigdeplvfleifkddhyadvslnqwlamlpetfvqahldlgk
dftdvlskekhpvvkkk