PDB entry 5pn3
View 5pn3 on RCSB PDB site
Description: PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 197)
Class: oxidoreductase
Keywords: PanDDA, SGC - Diamond I04-1 fragment screening, Jmj domain, epigenetics, OXIDOREDUCTASE
Deposited on
2017-02-07, released
2017-03-15
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-03-15, with a file datestamp of
2017-03-10.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Lysine-specific demethylase 4D
Species: Homo sapiens [TaxId:9606]
Gene: KDM4D, JHDM3D, JMJD2D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5pn3a_ - Heterogens: ZN, NI, MG, OGA, EDO, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5pn3A (A:)
mhhhhhhssgvdlgtenlyfqsmetmkskancaqnpncnimifhptkeefndfdkyiaym
esqgahraglakiippkewkaretydniseiliatplqqvasgragvftqyhkkkkamtv
geyrhlanskkyqtpphqnfedlerkywknriynspiygadisgslfdentkqwnlghlg
tiqdllekecgvviegvntpylyfgmwkttfawhtedmdlysinylhlgepktwyvvppe
hgqrlerlarelfpgssrgcgaflrhkvalisptvlkengipfnritqeagefmvtfpyg
yhagfnhgfncaeainfatprwidygkmasqcscgearvtfsmdafvrilqperydlwkr
gqdr
Sequence, based on observed residues (ATOM records): (download)
>5pn3A (A:)
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgqd