PDB entry 5ocr

View 5ocr on RCSB PDB site
Description: Crystal structure of the kappa-carrageenase zobellia_236 from Zobellia galactanivorans
Class: hydrolase
Keywords: Glycoside hydrolase 16, kappa-carrageenase, beta-jellyroll, marine polysaccharidase, HYDROLASE
Deposited on 2017-07-03, released 2017-10-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 1.66 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: kappa-carrageenase
    Species: Zobellia galactanivorans [TaxId:63186]
    Gene: CGKA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84907 (8-285)
      • insertion (192)
      • conflict (193)
    Domains in SCOPe 2.06: d5ocra_
  • Chain 'B':
    Compound: kappa-carrageenase
    Species: Zobellia galactanivorans [TaxId:63186]
    Gene: CGKA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84907 (8-285)
      • insertion (192)
      • conflict (193)
    Domains in SCOPe 2.06: d5ocrb_
  • Chain 'C':
    Compound: kappa-carrageenase
    Species: Zobellia galactanivorans [TaxId:63186]
    Gene: CGKA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84907 (8-285)
      • insertion (192)
      • conflict (193)
    Domains in SCOPe 2.06: d5ocrc_
  • Chain 'D':
    Compound: kappa-carrageenase
    Species: Zobellia galactanivorans [TaxId:63186]
    Gene: CGKA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O84907 (8-285)
      • insertion (192)
      • conflict (193)
    Domains in SCOPe 2.06: d5ocrd_
  • Heterogens: GOL, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ocrA (A:)
hhhhhhgsqqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqkn
vkisngiaeltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfw
lysdfdysvangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpk
mypqeqlnkwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslg
lrkpfvkffdnknnainpetdakareklsdiptsmyvdyvrvweks

    Sequence, based on observed residues (ATOM records): (download) 
    >5ocrA (A:)
qqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqknvkisngia
eltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfwlysdfdys
vangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpkmypqeqln
kwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslglrkpfvkf
fdnknnainpetdakareklsdiptsmyvdyvrvweks

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ocrB (B:)
hhhhhhgsqqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqkn
vkisngiaeltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfw
lysdfdysvangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpk
mypqeqlnkwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslg
lrkpfvkffdnknnainpetdakareklsdiptsmyvdyvrvweks

    Sequence, based on observed residues (ATOM records): (download) 
    >5ocrB (B:)
qqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqknvkisngia
eltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfwlysdfdys
vangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpkmypqeqln
kwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslglrkpfvkf
fdnknnainpetdakareklsdiptsmyvdyvrvweks

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ocrC (C:)
hhhhhhgsqqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqkn
vkisngiaeltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfw
lysdfdysvangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpk
mypqeqlnkwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslg
lrkpfvkffdnknnainpetdakareklsdiptsmyvdyvrvweks

    Sequence, based on observed residues (ATOM records): (download) 
    >5ocrC (C:)
qqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqknvkisngia
eltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfwlysdfdys
vangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpkmypqeqln
kwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslglrkpfvkf
fdnknnainpetdakareklsdiptsmyvdyvrvweks

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ocrD (D:)
hhhhhhgsqqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqkn
vkisngiaeltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfw
lysdfdysvangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpk
mypqeqlnkwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslg
lrkpfvkffdnknnainpetdakareklsdiptsmyvdyvrvweks

    Sequence, based on observed residues (ATOM records): (download) 
    >5ocrD (D:)
qqptktsnpndqwtikwsasdefnkndpdwakwiktgnlpntsawkwnnqknvkisngia
eltmrhnanntpdggtyftsgifksyqkftygyfeakiqgadigegvcpsfwlysdfdys
vangetvyseidvvelqqfdwyeghqddiydmdlnlhavvkengqgvwkrpkmypqeqln
kwrapwdpskdfhiygcevnqneiiwyvdgvevarkpnkywhrpmnvtlslglrkpfvkf
fdnknnainpetdakareklsdiptsmyvdyvrvweks