PDB entry 5nhd

View 5nhd on RCSB PDB site
Description: Crystal structure of xylose isomerase from Piromyces E2 in complex with 2 Ni2+ ions and xylose
Class: isomerase
Keywords: isomerase, TIM-barrel
Deposited on 2017-03-21, released 2017-11-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5nhda_
  • Chain 'B':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5nhdb_
  • Chain 'C':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5nhdc_
  • Chain 'D':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5nhdd_
  • Heterogens: NI, XLS, XYP, XYS, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5nhdA (A:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nhdA (A:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5nhdB (B:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nhdB (B:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5nhdC (C:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nhdC (C:)
keyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqfg
ggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlka
vvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagielg
aenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptkh
qydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrgd
yqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgmd
amaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkqt
sgkqelyeaivamyq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5nhdD (D:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nhdD (D:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq