PDB entry 5ner

View 5ner on RCSB PDB site
Description: Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A prime
Class: virus
Keywords: Foot and Mouth Disease Virus, FMDV, virus, OpanAsia, virus-receptor, complex
Deposited on 2017-03-11, released 2017-06-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-06-21, with a file datestamp of 2017-06-16.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: O PanAsia VP1
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ner1_
  • Chain '2':
    Compound: O PanAsia VP2
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: O PanAsia VP3
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot J3T9N5 (0-219)
      • engineered mutation (55)
    Domains in SCOPe 2.06: d5ner3_
  • Chain '4':
    Compound: O PanAsia VP4
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: Integrin alpha-V
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGAV, MSK8, VNRA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06756 (0-593)
      • conflict (399)
    Domains in SCOPe 2.06: d5nera1, d5nera2
  • Chain 'B':
    Compound: integrin beta-6
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGB6
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18564 (0-469)
      • conflict (265)
      • conflict (447)
  • Heterogens: MAN, NAG, CA

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ner1 (1:)
ttsagesadpvtatvenyggetqvqrrqhtdvsfildrfvkvtpkdqinvldlmqtpaht
lvgallrtatyyfadlevavkhegnltwvpngapetaldnttnptayhkapltrlalpyt
aphrvlatvyngnckygeshttnvrgdlqvlaqkvartlptsfnygaikatrvtellyrm
kraetycprpllaihpsearhkqkivapvk

  • Chain '2':
    No sequence available.

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ner3 (3:)
gifpvacsdgygglvttdpktadpaygkvfnpprnmlpgrftnfldvaeacptflrfegd
vpyvttktdsdrilaqfdlslaakhmsntflaglaqyytqysgtinlhfmftgptdakar
ymiayappgmeppktpeaaahcihaewdtglnskftfsipylsaadyaytasdtaettnv
qgwvclfqithgkadgdalvvlasagkdfelrlpvdartq

  • Chain '4':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5nerA (A:)
fnldvdspaeysgpegsyfgfavdffvpsassrmfllvgapkanttqpgiveggqvlkcd
wsstrrcqpiefdatgnrdyakddplefkshqwfgasvrskqdkilacaplyhwrtemkq
erepvgtcflqdgtktveyapcrsqdidadgqgfcqggfsidftkadrvllggpgsfywq
gqlisdqvaeivskydpnvysikynnqlatrtaqaifddsylgysvavgdfngdgiddfv
sgvpraartlgmvyiydgknmsslynftgeqmaayfgfsvaatdingddyadvfigaplf
mdrgsdgklqevgqvsvslqrasgdfqttklngfevfarfgsaiaplgdldqdgfndiai
aapyggedkkgivyifngrstglnavpsqilegqwaarscppsfgysmkgatdidkngyp
dlivgafgvdrailyrarpvitvnaglevypsilnqdnktcslpgtalkvscfnvrfclk
adgkgvlprklnfqvellldklkqkgairralflysrspshsknmtisrgglmqceelia
ylrdesefrdkltpitifmeyrldyrtaadttglqpilnqftpanisrqahill

    Sequence, based on observed residues (ATOM records): (download) 
    >5nerA (A:)
fnldvdspaeysgpegsyfgfavdffvpssrmfllvgapkanttqpgiveggqvlkcdws
strrcqpiefdatgnrdyakddplefkshqwfgasvrskqdkilacaplyhwrtemkqer
epvgtcflqdgtktveyapcrsqdidadgqgfcqggfsidftkadrvllggpgsfywqgq
lisdqvaeivskydpnvysikynnqlatrtaqaifddsylgysvavgdfngdgiddfvsg
vpraartlgmvyiydgknmssynftgeqmaayfgfsvaatdingddyadvfigaplfmdr
gsdgklqevgqvsvslqrasgdfqttklngfevfarfgsaiaplgdldqdgfndiaiaap
yggedkkgivyifngrstglnavpsqilegqwaarscppsfgysmkgatdidkngypdli
vgafgvdrailyrarpvitvnaglevypsilnqdnktcslpgtalkvscfnvrfclkadg
kgvlprklnfqvellldklkgairralflysrspshsknmtisrgglmqceeliaylrde
sefrdkltpitifmeyrldyrtaadttglqpilnqftpanisrqahill

  • Chain 'B':
    No sequence available.