PDB entry 5kiy

View 5kiy on RCSB PDB site
Description: p97 ND1-A232E in complex with VIMP
Class: hydrolase/membrane protein
Keywords: p97 adaptor protein, VCP-interacting membrane protein, VIMP, HYDROLASE-MEMBRANE PROTEIN complex
Deposited on 2016-06-17, released 2017-12-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-12-20, with a file datestamp of 2017-12-15.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P55072 (Start-459)
      • engineered mutation (231)
      • expression tag (460-462)
    Domains in SCOPe 2.07: d5kiya1, d5kiya2, d5kiya3, d5kiya4
  • Chain 'B':
    Compound: Selenoprotein S
    Species: Homo sapiens [TaxId:9606]
    Gene: SELENOS, SELS, VIMP, AD-015, SBBI8
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ANP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5kiyA (A:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkeigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnrshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5kiyA (A:)
ddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavc
ivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgn
lfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepi
kredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkeigvkpprgillygppgt
gktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapaiifideldai
apkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdi
gipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdl
idledetidaevmnslavtmddfrwalsqsnrsh

  • Chain 'B':
    No sequence available.