PDB entry 5jrd

View 5jrd on RCSB PDB site
Description: E. coli Hydrogenase-1 variant P508A
Class: oxidoreductase
Keywords: Hydrogen activation, NiFe Hydrogenase, OXIDOREDUCTASE
Deposited on 2016-05-06, released 2017-03-08
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-03-08, with a file datestamp of 2017-03-03.
Experiment type: XRAY
Resolution: 1.2 Å
R-factor: N/A
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Hydrogenase-1 large chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: hyaB, b0973, JW0955
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ACD8 (Start-581)
      • conflict (507)
    Domains in SCOPe 2.06: d5jrdl_
  • Chain 'M':
    Compound: Hydrogenase-1 large chain
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: hyaB, b0973, JW0955
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ACD8 (Start-581)
      • conflict (507)
    Domains in SCOPe 2.06: d5jrdm_
  • Chain 'S':
    Compound: Hydrogenase-1 small chain
    Species: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) [TaxId:199310]
    Gene: hyaA, c1113
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5jrds_
  • Chain 'T':
    Compound: Hydrogenase-1 small chain
    Species: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) [TaxId:199310]
    Gene: hyaA, c1113
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5jrdt_
  • Heterogens: SF4, F3S, SF3, CL, FCO, NI, MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5jrdL (L:)
mstqyetqgytinnagrrlvvdpitrieghmrcevnindqnvitnavscgtmfrgleiil
qgrdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhl
vhfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlg
ifrngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpca
inidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkc
vlsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndq
vgrhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliay
hkgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkng
nlatastekwepatwptecrgvgfteaargalghwaairdgkidlyqcvvpttwnasprd
pkgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

    Sequence, based on observed residues (ATOM records): (download) 
    >5jrdL (L:)
stqyetqgytinnagrrlvvdpitrieghmrcevnindqnvitnavscgtmfrgleiilq
grdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhlv
hfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlgi
frngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpcai
nidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkcv
lsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndqv
grhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliayh
kgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkngn
latastekwepatwptecrgvgfteaargalghwaairdgkidlyqcvvpttwnasprdp
kgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >5jrdM (M:)
mstqyetqgytinnagrrlvvdpitrieghmrcevnindqnvitnavscgtmfrgleiil
qgrdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhl
vhfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlg
ifrngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpca
inidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkc
vlsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndq
vgrhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliay
hkgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkng
nlatastekwepatwptecrgvgfteaargalghwaairdgkidlyqcvvpttwnasprd
pkgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

    Sequence, based on observed residues (ATOM records): (download) 
    >5jrdM (M:)
stqyetqgytinnagrrlvvdpitrieghmrcevnindqnvitnavscgtmfrgleiilq
grdprdawafvericgvctgvhalasvyaiedaigikvpdnaniirnimlatlwchdhlv
hfyqlagmdwidvldalkadprktselaqslsswpksspgyffdvqnrlkkfveggqlgi
frngywghpqyklppeanlmgfahylealdfqreivkihavfggknphpnwivggmpcai
nidesgavgavnmerlnlvqsiitrtadfinnvmipdalaigqfnkpwseigtglsdkcv
lsygafpdiandfgeksllmpggavingdfnnvlpvdlvdpqqvqefvdhawyrypndqv
grhpfdgitdpwynpgdvkgsdtniqqlneqeryswikaprwrgnamevgplartliayh
kgdaatvesvdrmmsalnlplsgiqstlgrilcraheaqwaagklqyffdklmtnlkngn
latastekwepatwptecrgvgfteaargalghwaairdgkidlyqcvvpttwnasprdp
kgqigayeaalmntkmaipeqpleilrtlhsfdpclacsth

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >5jrdS (S:)
lenkpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevf
ediitqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgc
vqaarpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplm
fygqrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvs
fpiqsghgclgcaengfwdrgsfysrvvdipqmgthstadtvgltalgvvaaavgvhava
savdqrrrhnqqptetehqpgnedkqarshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5jrdS (S:)
kpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevfedi
itqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgcvqa
arpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplmfyg
qrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvsfpi
qsghgclgcaengfwdrgsfysrv

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >5jrdT (T:)
lenkpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevf
ediitqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgc
vqaarpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplm
fygqrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvs
fpiqsghgclgcaengfwdrgsfysrvvdipqmgthstadtvgltalgvvaaavgvhava
savdqrrrhnqqptetehqpgnedkqarshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5jrdT (T:)
kpripvvwihglectcctesfirsahplakdvilslisldyddtlmaaagtqaeevfedi
itqyngkyilavegnpplgeqgmfcissgrpfieklkraaagasaiiawgtcaswgcvqa
arpnptqatpidkvitdkpiikvpgcppipdvmsaiitymvtfdrlpdvdrmgrplmfyg
qrihdkcyrrahfdagefvqswdddaarkgyclykmgckgpttynacsstrwndgvsfpi
qsghgclgcaengfwdrgsfysrv