PDB entry 5jor

View 5jor on RCSB PDB site
Description: Crystal structure of unbound anti-glycan antibody Fab14.22 at 2.2 A
Class: immune system
Keywords: S. pneumoniae serotype 14, anti-glycan B cells, synthetic conjugate vaccine, nanomolar affinity anti-glycan antibody, immune system, immune system-bacterial glycan complex
Deposited on 2016-05-02, released 2017-03-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-04-12, with a file datestamp of 2017-04-07.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fab 14.22 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
    Domains in SCOPe 2.07: d5jora1, d5jora2
  • Chain 'B':
    Compound: Fab14.22 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
  • Chain 'C':
    Compound: Fab 14.22 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
    Domains in SCOPe 2.07: d5jorc1, d5jorc2
  • Chain 'D':
    Compound: Fab14.22 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
  • Chain 'E':
    Compound: Fab 14.22 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
    Domains in SCOPe 2.07: d5jore1, d5jore2
  • Chain 'F':
    Compound: Fab14.22 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
  • Chain 'H':
    Compound: Fab14.22 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
  • Chain 'L':
    Compound: Fab 14.22 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JOR (0-End)
    Domains in SCOPe 2.07: d5jorl1, d5jorl2
  • Heterogens: GOL, SO4, 1PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jorA (A:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >5jorA (A:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5jorC (C:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >5jorC (C:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5jorE (E:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >5jorE (E:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5jorL (L:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >5jorL (L:)
dvlltqtplslpvnlgdqasiscrssqtilhsdgytylewylqrpgqspklliyrvykrf
sgipdrfrgsgsgmdftltisgveaedlgiyycfqgsyvprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne