PDB entry 5j57
View 5j57 on RCSB PDB site
Description: V5E1-RTA complex
Class: hydrolase/immune system
Keywords: Ricin, RTA, single chain antibodies (VHH), HYDROLASE-IMMUNE SYSTEM complex
Deposited on
2016-04-01, released
2016-12-07
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-11, with a file datestamp of
2019-12-06.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ricin
Species: Ricinus communis [TaxId:3988]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5j57a_ - Chain 'B':
Compound: VHH single chain antibody V5E1
Species: VICUGNA PACOS [TaxId:30538]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5j57b_ - Heterogens: CL, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5j57A (A:)
mifpkqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfil
velsnhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfaf
ggnydrleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaa
rfqyiegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngsk
fsvydvsilipiialmvyrcapppssqf
Sequence, based on observed residues (ATOM records): (download)
>5j57A (A:)
kqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvels
nhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggny
drleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqy
iegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvy
dvsilipiialmvyrcapppssqf
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5j57B (B:)
vqlaetggglvepggslrlscaapefrlqyytagwfrqapgkerewvacisagggvtyyt
gsvqgrftisrdnakrtvylqmdslkpedtavyscaadleysqimpscrgsygvrgqgtq
vtvssah
Sequence, based on observed residues (ATOM records): (download)
>5j57B (B:)
vqlaetggglvepggslrlscaapefrlqyytagwfrqaerewvacisagggvtyytgsv
qgrftisrdnakrtvylqmdslkpedtavyscaadleysqimpscrgsygvrgqgtqvtv
ssah