PDB entry 5h2f

View 5h2f on RCSB PDB site
Description: Crystal structure of the PsbM-deletion mutant of photosystem II
Class: photosynthesis
Keywords: Photosynthesis, Photosystem II, Mutant, PsbM
Deposited on 2016-10-15, released 2017-03-22
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-03-22, with a file datestamp of 2017-03-17.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Photosystem II protein D1 1
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A444 (0-333)
• Chain 'B':
  Compound: Photosystem II CP47 reaction center protein
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIQ1 (0-504)
• Chain 'C':
  Compound: Photosystem II CP43 reaction center protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIF8 (Start-454)
• Chain 'D':
  Compound: Photosystem II D2 protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8CM25 (0-341)
• Chain 'E':
  Compound: Cytochrome b559 subunit alpha
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIP0 (0-End)
• Chain 'F':
  Compound: Cytochrome b559 subunit beta
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIN9 (0-32)
• Chain 'H':
  Compound: Photosystem II reaction center protein H
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DJ43 (0-62)
• Chain 'I':
  Compound: Photosystem II reaction center protein I
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DJZ6 (0-End)
• Chain 'J':
  Compound: Photosystem II reaction center protein J
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P59087 (Start-39)
• Chain 'K':
  Compound: Photosystem II reaction center protein K
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9F1K9 (0-36)
• Chain 'L':
  Compound: Photosystem II reaction center protein L
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIN8 (0-34)
• Chain 'O':
  Compound: Photosystem II manganese-stabilizing polypeptide
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A431 (0-242)
  Domains in SCOPe 2.06: d5h2fo_
• Chain 'T':
  Compound: Photosystem II reaction center protein T
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIQ0 (0-29)
• Chain 'U':
  Compound: Photosystem II 12 kDa extrinsic protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9F1L5 (0-96)
• Chain 'V':
  Compound: cytochrome c-550
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A386 (0-136)
• Chain 'X':
  Compound: Photosystem II reaction center X protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9F1R6 (0-36)
• Chain 'Y':
  Compound: Photosystem II reaction center protein ycf12
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DJI1 (0-28)
• Chain 'Z':
  Compound: Photosystem II reaction center protein Z
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DHJ2 (0-61)
• Chain 'a':
  Compound: Photosystem II protein D1 1
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A444 (0-333)
• Chain 'b':
  Compound: Photosystem II CP47 reaction center protein
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIQ1 (0-End)
• Chain 'c':
  Compound: Photosystem II CP43 reaction center protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIF8 (0-454)
• Chain 'd':
  Compound: Photosystem II D2 protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8CM25 (Start-341)
• Chain 'e':
  Compound: Cytochrome b559 subunit alpha
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIP0 (Start-79)
• Chain 'f':
  Compound: Cytochrome b559 subunit beta
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIN9 (Start-32)
• Chain 'h':
  Compound: Photosystem II reaction center protein H
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DJ43 (0-End)
• Chain 'i':
  Compound: Photosystem II reaction center protein I
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DJZ6 (0-35)
• Chain 'j':
  Compound: Photosystem II reaction center protein J
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P59087 (0-39)
• Chain 'k':
  Compound: Photosystem II reaction center protein K
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9F1K9 (0-36)
• Chain 'l':
  Compound: Photosystem II reaction center protein L
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIN8 (0-34)
• Chain 'o':
  Compound: Photosystem II manganese-stabilizing polypeptide
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A431 (0-242)
• Chain 't':
  Compound: Photosystem II reaction center protein T
  Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DIQ0 (0-29)
• Chain 'u':
  Compound: Photosystem II 12 kDa extrinsic protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9F1L5 (0-96)
  Domains in SCOPe 2.06: d5h2fu_
• Chain 'v':
  Compound: cytochrome c-550
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A386 (0-136)
• Chain 'x':
  Compound: Photosystem II reaction center X protein
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9F1R6 (0-End)
• Chain 'y':
  Compound: Photosystem II reaction center protein ycf12
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DJI1 (0-28)
• Chain 'z':
  Compound: Photosystem II reaction center protein Z
  Species: Thermosynechococcus elongatus (strain BP-1) [TaxId:197221]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8DHJ2 (0-End)
• Heterogens: OEX, FE2, CL, CLA, PHO, BCR, LMG, PL9, LHG, SQD, LMT, UNL, DMS, BCT, CA, HTG, DGD, HEM, RRX, MG, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'O':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5h2fO (O:)
  tltyddivgtglankcptlddtargaypidssqtyriarlclqpttflvkeepknkrqea
  efvptklvtrettsldqiqgelkvnsdgsltfveedgidfqpvtvqmaggeripllftvk
  nlvastqpnvtsittstdfkgefnvpsyrtanfldpkgrglasgydsaialpqakeeela
  ranvkrfsltkgqislnvakvdgrtgeiagtfeseqlsdddmgahephevkiqgvfyasi
  epa
  

  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.
  
  
• Chain 'a':
  No sequence available.
  
  
• Chain 'b':
  No sequence available.
  
  
• Chain 'c':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'h':
  No sequence available.
  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'j':
  No sequence available.
  
  
• Chain 'k':
  No sequence available.
  
  
• Chain 'l':
  No sequence available.
  
  
• Chain 'o':
  No sequence available.
  
  
• Chain 't':
  No sequence available.
  
  
• Chain 'u':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5h2fu (u:)
  elvnvvdeklgtaygekidlnntniaafiqyrglyptlaklivknapyesvedvlnipgl
  terqkqilrenlehftvtevetalveggdrynnglyk
  

  
  
• Chain 'v':
  No sequence available.
  
  
• Chain 'x':
  No sequence available.
  
  
• Chain 'y':
  No sequence available.
  
  
• Chain 'z':
  No sequence available.