PDB entry 5gxd

View 5gxd on RCSB PDB site
Description: Structure of acryloyl-CoA lyase PrpE from Dinoroseobacter shibae DFL 12
Class: lyase
Keywords: acryloyl-CoA, lyase, acrylate
Deposited on 2016-09-17, released 2017-09-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AMP-dependent synthetase and ligase
    Species: Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) [TaxId:398580]
    Gene: Dshi_0825
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gxda_
  • Heterogens: AMP, AKR, COA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5gxdA (A:)
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hvqagngdrvaiihdspvthtkqeityaelqervsllagalrakgiekgdrvliympmvp
qaleamlacarlgaihsvvfggfaanelavriddatpkaiiaascgiepgrvvhykplld
gaidlathkpdfclifqreqevahlepgrdfdwheaqygvdpaecvpvagnhpayilyts
gttgqpkgvlrptaghlvalnwtmkniynvdpgdvfwaasdvgwvvghsyicyaplihgn
ttivfegkpvgtpdagtfwrvisehkvksfftaptalravkredpngefigkydlshlkt
vylageradpdtiqwtmdklgvpvidhwwqtetgwaiaanpmgiehlpvkigspsvampg
ydvqvldegghpvapgtlgaiavklplapgtlpnlwqaeerfvksylttfpgyyetgdag
yidedgylyimartddvinvaghrlstgameevlashpdvaecavigvsdtlkgqmplgf
lclsagvnrphdeiakecvklvrekigpvaafklacvvdrlpktrsgkilrgtmvniadg
tpwkmpatiddpaildeitealgklgypas

    Sequence, based on observed residues (ATOM records): (download) 
    >5gxdA (A:)
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vqagngdrvaiihdspvthtkqeityaelqervsllagalrakgiekgdrvliympmvpq
aleamlacarlgaihsvvfggfaanelavriddatpkaiiaascgiepgrvvhykplldg
aidlathkpdfclifqreqevahlepgrdfdwheaqygvdpaecvpvagnhpayilytsg
ttgqpkgvlrptaghlvalnwtmkniynvdpgdvfwaasdvgwvvghsyicyaplihgnt
tivfegkpvgtpdagtfwrvisehkvksfftaptalravkredpngefigkydlshlktv
ylageradpdtiqwtmdklgvpvidhwwqtetgwaiaanpmgiehlpvkigspsvampgy
dvqvldegghpvapgtlgaiavklplapgtlpnlwqaeerfvksylttfpgyyetgdagy
idedgylyimartddvinvaghrlstgameevlashpdvaecavigvsdtlkgqmplgfl
clsagvnrphdeiakecvklvrekigpvaafklacvvdrlpktrsgkilrgtmvniadgt
pwkmpatiddpaildeitealgklgyp