PDB entry 5gt0

View 5gt0 on RCSB PDB site
Description: Crystal structure of nucleosome complex with human testis-specific histone variants, Th2a
Class: structural protein/DNA
Keywords: Nucleosome, NCP, Histone variants, testis-specifc, Th2a, STRUCTURAL PROTEIN-DNA complex
Deposited on 2016-08-18, released 2017-02-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-02-15, with a file datestamp of 2017-02-10.
Experiment type: XRAY
Resolution: 2.82 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone H3.1
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H3A, H3FA, HIST1H3B, H3FL, HIST1H3C, H3FC, HIST1H3D, H3FB, HIST1H3E, H3FD, HIST1H3F, H3FI, HIST1H3G, H3FH, HIST1H3H, H3FK, HIST1H3I, H3FF, HIST1H3J, H3FJ
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gt0b_
  • Chain 'C':
    Compound: Histone H2A type 1-A
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H2AA, H2AFR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gt0c_
  • Chain 'D':
    Compound: Histone H2B type 1-J
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H2BJ, H2BFR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gt0d_
  • Chain 'E':
    Compound: Histone H3.1
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H3A, H3FA, HIST1H3B, H3FL, HIST1H3C, H3FC, HIST1H3D, H3FB, HIST1H3E, H3FD, HIST1H3F, H3FI, HIST1H3G, H3FH, HIST1H3H, H3FK, HIST1H3I, H3FF, HIST1H3J, H3FJ
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: histone h4
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gt0f_
  • Chain 'G':
    Compound: Histone H2A type 1-A
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H2AA, H2AFR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gt0g_
  • Chain 'H':
    Compound: Histone H2B type 1-J
    Species: Homo sapiens [TaxId:9606]
    Gene: HIST1H2BJ, H2BFR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5gt0h_
  • Chain 'I':
    Compound: DNA (146-mer)
    Species: Homo sapiens [TaxId:9606]
  • Chain 'J':
    Compound: DNA (146-mer)
    Species: Homo sapiens [TaxId:9606]
  • Heterogens: MN, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5gt0B (B:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt0B (B:)
dniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvta
mdvvyalkrqgrtlygfgg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5gt0C (C:)
sgrgkqggkaraksksrssraglqfpvgrihrllrkgnyaerigagapvylaavleylta
eilelagnasrdnkktriiprhlqlairndeelnkllggvtiaqggvlpniqavllpkkt
eshhhkaqsk

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt0C (C:)
sksrssraglqfpvgrihrllrkgnyaerigagapvylaavleyltaeilelagnasrdn
kktriiprhlqlairndeelnkllggvtiaqggvlpniqavllpkk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5gt0D (D:)
pepaksapapkkgskkavtkaqkkdgkkrkrsrkesysvyvykvlkqvhpdtgisskamg
imnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt0D (D:)
krkrsrkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrs
titsreiqtavrlllpgelakhavsegtkavtkytssk

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5gt0F (F:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt0F (F:)
rhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteha
krktvtamdvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5gt0G (G:)
sgrgkqggkaraksksrssraglqfpvgrihrllrkgnyaerigagapvylaavleylta
eilelagnasrdnkktriiprhlqlairndeelnkllggvtiaqggvlpniqavllpkkt
eshhhkaqsk

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt0G (G:)
ksksrssraglqfpvgrihrllrkgnyaerigagapvylaavleyltaeilelagnasrd
nkktriiprhlqlairndeelnkllggvtiaqggvlpniqavllpk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5gt0H (H:)
pepaksapapkkgskkavtkaqkkdgkkrkrsrkesysvyvykvlkqvhpdtgisskamg
imnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt0H (H:)
srkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstits
reiqtavrlllpgelakhavsegtkavtkytssk

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.