PDB entry 5f2q

View 5f2q on RCSB PDB site
Description: C-type lectin from Bothrops jararacussu
Class: sugar binding protein
Keywords: decamer, C-type lectin, calcium, Bothrops jararacussu, SUGAR BINDING PROTEIN
Deposited on 2015-12-02, released 2016-12-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qa_
  • Chain 'B':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qb_
  • Chain 'C':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qc_
  • Chain 'D':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qd_
  • Chain 'E':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qe_
  • Chain 'F':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qf_
  • Chain 'G':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qg_
  • Chain 'H':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qh_
  • Chain 'I':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qi_
  • Chain 'J':
    Compound: C-type lectin BJcuL
    Species: Bothrops jararacussu [TaxId:8726]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f2qj_
  • Heterogens: CA, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5f2qA (A:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

    Sequence, based on observed residues (ATOM records): (download) 
    >5f2qA (A:)
ncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyhk
gqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwndq
vcesknaflcqckf

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5f2qB (B:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5f2qC (C:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5f2qD (D:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

    Sequence, based on observed residues (ATOM records): (download) 
    >5f2qD (D:)
ncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyhk
gqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwndq
vcesknaflcqckf

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5f2qE (E:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5f2qF (F:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

    Sequence, based on observed residues (ATOM records): (download) 
    >5f2qF (F:)
ncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyhk
gqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwndq
vcesknaflcqckf

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5f2qG (G:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

    Sequence, based on observed residues (ATOM records): (download) 
    >5f2qG (G:)
ncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyhk
gqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwndq
vcesknaflcqckf

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5f2qH (H:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

    Sequence, based on observed residues (ATOM records): (download) 
    >5f2qH (H:)
ncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyhk
gqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwndq
vcesknaflcqckf

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5f2qI (I:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5f2qJ (J:)
nncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyh
kgqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwnd
qvcesknaflcqckf

    Sequence, based on observed residues (ATOM records): (download) 
    >5f2qJ (J:)
ncpqdwlpmnglcykifnelkawkdaemfcrkykpgchlasihlygespeiaeyisdyhk
gqsevwiglcdkkkdfswewtdrsctdylswdknqpdhyqnkefcvelvsntgyrlwndq
vcesknaflcqckf