PDB entry 5dpt
View 5dpt on RCSB PDB site
Description: Crystal structure of PLEKHM1 LIR-fused human GABARAPL1_2-117
Class: protein binding
Keywords: Autophagy, chimeric protein, PROTEIN BINDING
Deposited on
2015-09-14, released
2016-09-28
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-09-28, with a file datestamp of
2016-09-23.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Pleckstrin homology domain-containing family M member 1, Gamma-aminobutyric acid receptor-associated protein-like 1,Gamma-aminobutyric acid receptor-associated protein-like 1
Species: Homo sapiens [TaxId:9606]
Gene: PLEKHM1, GABARAPL1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5dpta_ - Chain 'B':
Compound: Pleckstrin homology domain-containing family M member 1, Gamma-aminobutyric acid receptor-associated protein-like 1,Gamma-aminobutyric acid receptor-associated protein-like 1
Species: Homo sapiens [TaxId:9606]
Gene: PLEKHM1, GABARAPL1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5dptb_ - Heterogens: MPD
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5dptA (A:)
gsvrpqqedewvnvgskfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdld
krkylvpsdltvgqfyflirkrihlrpedalfffvnntipptsatmgqlyednheedyfl
yvaysdesvygk
Sequence, based on observed residues (ATOM records): (download)
>5dptA (A:)
edewvnvgskfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdldkrkylvp
sdltvgqfyflirkrihlrpedalfffvnntipptsatmgqlyednheedyflyvaysde
sv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5dptB (B:)
gsvrpqqedewvnvgskfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdld
krkylvpsdltvgqfyflirkrihlrpedalfffvnntipptsatmgqlyednheedyfl
yvaysdesvygk
Sequence, based on observed residues (ATOM records): (download)
>5dptB (B:)
dewvnvgskfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdldkrkylvps
dltvgqfyflirkrihlrpedalfffvnntipptsatmgqlyednheedyflyvaysdes
vyg