PDB entry 5d8a

View 5d8a on RCSB PDB site
Description: Crystal structure of recombinant foot-and-mouth-disease virus A22-H2093F empty capsid
Class: virus
Keywords: Foot and mouth disease virus, virus, picornavirus, vaccine, aphthovirus
Deposited on 2015-08-16, released 2015-09-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-10-14, with a file datestamp of 2015-10-09.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Foot-and-mouth disease virus - type A [TaxId:12111]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d8aa_
  • Chain 'B':
    Compound: vp2
    Species: Foot-and-mouth disease virus - type A [TaxId:12111]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6PN23 (Start-217)
      • engineered mutation (92)
  • Chain 'C':
    Compound: vp3
    Species: Foot-and-mouth disease virus - type A [TaxId:12111]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d8ac_
  • Chain 'D':
    Compound: vp4
    Species: Foot-and-mouth disease virus - type A [TaxId:12111]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d8aA (A:)
ttttgesadpvtttvenyggetqvqrrqhtdvtfimdrfvkiqnlnpthvidlmqthqhg
lvgallraatyyfsdleivvrhdgnltwvpngapeaalsntgnptaylkapftrlalpyt
aphrvlatvyngtskysaggtgrrgdlgplaarvaaqlpasfnfgaiqattihellvrmk
raelycprpllavevssqdrhkqkiiapakq

    Sequence, based on observed residues (ATOM records): (download) 
    >5d8aA (A:)
ttttgesadpvtttvenyggetqvqrrqhtdvtfimdrfvkiqnlnpthvidlmqthqhg
lvgallraatyyfsdleivvrhdgnltwvpngapeaalsntgnptaylkapftrlalpyt
aphrvlatvyngtskaqlpasfnfgaiqattihellvrmkraelycprpllavevssqdr
hkqkiiapak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5d8aC (C:)
givpvacsdgygglvttdpktadpvygmvynpprtnypgrftnlldvaeacptflcfdeg
kpyvvtrtdeqrllakfdvslaakhmsntylsgiaqyyaqysgtinlhfmftgstdskar
ymvayvppgvetppdtpekaahcihaewdtglnskftfsipyvsaadyaytasdvaettn
vqgwvciyqithgkaeqdtlvvsvsagkdfelrlpidprsq

  • Chain 'D':
    No sequence available.