PDB entry 5d2k

View 5d2k on RCSB PDB site
Description: 4-oxalocrotonate decarboxylase from Pseudomonas putida G7 - complexed with magnesium and 2-oxoadipate
Class: lyase
Keywords: naphthalene degradation, LYASE
Deposited on 2015-08-05, released 2016-05-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-05-04, with a file datestamp of 2016-04-29.
Experiment type: XRAY
Resolution: 1.57 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-oxalocrotonate decarboxylase NahK
    Species: Pseudomonas putida [TaxId:303]
    Gene: nahK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1XGK3 (Start-268)
      • engineered mutation (159)
    Domains in SCOPe 2.06: d5d2ka_
  • Chain 'B':
    Compound: 4-oxalocrotonate decarboxylase NahK
    Species: Pseudomonas putida [TaxId:303]
    Gene: nahK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1XGK3 (Start-268)
      • engineered mutation (159)
    Domains in SCOPe 2.06: d5d2kb_
  • Heterogens: MG, OOG, EDO, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d2kA (A:)
ghmasmnrtltreqvlalaehienaelnvhdigkvtndfpemtfadaydvqweirrrkea
rgnkivglkmgltswakmaqmgvetpiygfladyfsvpdggvvdcsklihpkieaeisvv
tkaplhgpgchlgdviaaidyviptvevidsryenfkfdpisvvadnasstrfitggrma
sleevdlrtlgvvmekngevvelgagaavlghplssvamlanllaergehipagtfimtg
gitaavpvapgdnitvryqglgsvsarfi

    Sequence, based on observed residues (ATOM records): (download) 
    >5d2kA (A:)
nrtltreqvlalaehienaelnvhdigkvtndfpemtfadaydvqweirrrkeargnkiv
glkmgltswakmaqmgvetpiygfladyfsvpdggvvdcsklihpkieaeisvvtkaplh
gpgchlgdviaaidyviptvevidsryenfkfdpisvvadnasstrfitggrmasleevd
lrtlgvvmekngevvelgagaavlghplssvamlanllaergehipagtfimtggitaav
pvapgdnitvryqglgsvsarfi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d2kB (B:)
ghmasmnrtltreqvlalaehienaelnvhdigkvtndfpemtfadaydvqweirrrkea
rgnkivglkmgltswakmaqmgvetpiygfladyfsvpdggvvdcsklihpkieaeisvv
tkaplhgpgchlgdviaaidyviptvevidsryenfkfdpisvvadnasstrfitggrma
sleevdlrtlgvvmekngevvelgagaavlghplssvamlanllaergehipagtfimtg
gitaavpvapgdnitvryqglgsvsarfi

    Sequence, based on observed residues (ATOM records): (download) 
    >5d2kB (B:)
nrtltreqvlalaehienaelnvhdigkvtndfpemtfadaydvqweirrrkeargnkiv
glkmgltswakmaqmgvetpiygfladyfsvpdggvvdcsklihpkieaeisvvtkaplh
gpgchlgdviaaidyviptvevidsryenfkfdpisvvadnasstrfitggrmasleevd
lrtlgvvmekngevvelgagaavlghplssvamlanllaergehipagtfimtggitaav
pvapgdnitvryqglgsvsarfi