PDB entry 5cqk

View 5cqk on RCSB PDB site
Description: Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Class: hydrolase
Keywords: APOBEC, deaminase, HYDROLASE
Deposited on 2015-07-21, released 2015-10-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-12-02, with a file datestamp of 2015-11-27.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA dC->dU-editing enzyme APOBEC-3B
    Species: Homo sapiens [TaxId:9606]
    Gene: APOBEC3B
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UH17 (Start-184)
      • engineered mutation (14)
      • engineered mutation (42)
      • engineered mutation (44)
      • engineered mutation (56)
      • engineered mutation (114)
    Domains in SCOPe 2.06: d5cqka_
  • Heterogens: ZN, GOL, PGE, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5cqkA (A:)
meilrylmdpdtftsnfnndplvlrrrqtylcyeverldngtsvkmdqhmgflcnesgrh
aelrfldlvpslqldpaqiyrvtwfiswspcfswgcagevraflqenthvrlrikaariy
dydplykealqmlrdagaqvsimtydefeycwdtfvyrqgcpfqpwdgleehsqalsgrl
railql

    Sequence, based on observed residues (ATOM records): (download) 
    >5cqkA (A:)
rylmdpdtftsnfnndplvlrrrqtylcyeverldngtsvkmdqhmgflcnesgrhaelr
fldlvpslqldpaqiyrvtwfiswspcfswgcagevraflqenthvrlrikaariydydp
lykealqmlrdagaqvsimtydefeycwdtfvyrqgcpfqpwdgleehsqalsgrlrail
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