PDB entry 5cmk
View 5cmk on RCSB PDB site
Description: Crystal structure of the GluK2EM LBD dimer assembly complex with glutamate and LY466195
Class: transport protein
Keywords: Membrane protein, TRANSPORT PROTEIN
Deposited on
2015-07-16, released
2016-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated
2016-10-05, with a file datestamp of
2016-09-30.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: glutamate receptor ionotropic, kainate 2
Species: Rattus norvegicus [TaxId:10116]
Gene: Grik2, Glur6
Database cross-references and differences (RAF-indexed):
- Uniprot P42260 (Start-116)
- engineered mutation (90)
- linker (117-118)
- Uniprot P42260 (119-End)
- engineered mutation (141)
- engineered mutation (173)
- engineered mutation (187)
Domains in SCOPe 2.08: d5cmka_ - Chain 'B':
Compound: glutamate receptor ionotropic, kainate 2
Species: Rattus norvegicus [TaxId:10116]
Gene: Grik2, Glur6
Database cross-references and differences (RAF-indexed):
- Uniprot P42260 (1-116)
- engineered mutation (90)
- linker (117-118)
- Uniprot P42260 (119-End)
- engineered mutation (141)
- engineered mutation (173)
- engineered mutation (187)
Domains in SCOPe 2.08: d5cmkb_ - Heterogens: GLU, LI, CL, LY5, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5cmkA (A:)
gsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgk
ygaqddvngqwngmvrelidhkadlavapltityvrekvidfskpfmtlgisilyrkgtp
idsaddlakqtkieygavedgstmtffkkskistydkmwafmssrrqsvlvksseegiqr
vltsdyallmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqe
egklhmmkekwwrgngcpe
Sequence, based on observed residues (ATOM records): (download)
>5cmkA (A:)
nrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkyg
aqddvngqwngmvrelidhkadlavapltityvrekvidfskpfmtlgisilyrkgtpid
saddlakqtkieygavedgstmtffkkskistydkmwafmssrrqsvlvksseegiqrvl
tsdyallmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqeeg
klhmmkekwwr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5cmkB (B:)
gsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgk
ygaqddvngqwngmvrelidhkadlavapltityvrekvidfskpfmtlgisilyrkgtp
idsaddlakqtkieygavedgstmtffkkskistydkmwafmssrrqsvlvksseegiqr
vltsdyallmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqe
egklhmmkekwwrgngcpe
Sequence, based on observed residues (ATOM records): (download)
>5cmkB (B:)
snrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgky
gaqddvngqwngmvrelidhkadlavapltityvrekvidfskpfmtlgisilyrkgtpi
dsaddlakqtkieygavedgstmtffkkskistydkmwafmssrrqsvlvksseegiqrv
ltsdyallmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqee
gklhmmkekwwrg