PDB entry 4y1l
View 4y1l on RCSB PDB site
Description: Ubc9 Homodimer The Missing Link in Poly-SUMO Chain Formation
Class: ligase/nuclear protein
Keywords: UBC9, RWD, SUMOylation, Homodimer, SUMO, ligase-nuclear protein complex
Deposited on
2015-02-08, released
2015-05-06
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-05-06, with a file datestamp of
2015-05-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: SUMO-conjugating enzyme UBC9
Species: Homo sapiens [TaxId:9606]
Gene: UBE2I, UBC9, UBCE9
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4y1la_ - Chain 'B':
Compound: SUMO-conjugating enzyme UBC9
Species: Homo sapiens [TaxId:9606]
Gene: UBE2I, UBC9, UBCE9
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4y1lb_ - Chain 'C':
Compound: RWD domain-containing protein 3
Species: Homo sapiens [TaxId:9606]
Gene: RWDD3, RSUME
Database cross-references and differences (RAF-indexed):
- Uniprot Q9Y3V2 (0-111)
- conflict (84)
- conflict (107)
- expression tag (112)
Domains in SCOPe 2.05: d4y1lc_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4y1lA (A:)
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfaps
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4y1lB (B:)
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfaps
Sequence, based on observed residues (ATOM records): (download)
>4y1lB (B:)
msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
nepniqdpaqaeaytiycqnrveyekrvraqakkfap
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4y1lC (C:)
aepvqeelsvlaaifcrphewevlsrsetdgtvfrihtkaegfmdvdiplelvfhlpvny
psclpgisinseqltraqcvtvkeklleqaesllsepmvhelvlwiqenlrha
Sequence, based on observed residues (ATOM records): (download)
>4y1lC (C:)
aepvqeelsvlaaifcrphewevlsrsetdgtvfrihtkaegfmplelvfhlpvnypscl
pgisinseqltraqcvtvkeklleqaesllsepmvhelvlwiqenlrha