PDB entry 4xda

View 4xda on RCSB PDB site
Description: Vibrio cholerae O395 Ribokinase complexed with Ribose, ADP and Sodium ion.
Class: transferase
Keywords: ribokinase, ribose, kinase
Deposited on 2014-12-19, released 2015-03-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-03-04, with a file datestamp of 2015-02-27.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribokinase
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: rbsK, VC0395_0007, VC395_A0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4xdaa_
  • Chain 'B':
    Compound: ribokinase
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: rbsK, VC0395_0007, VC395_A0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4xdab_
  • Chain 'C':
    Compound: ribokinase
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: rbsK, VC0395_0007, VC395_A0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4xdac_
  • Chain 'D':
    Compound: ribokinase
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: rbsK, VC0395_0007, VC395_A0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4xdad_
  • Heterogens: RIB, ADP, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4xdaA (A:)
gshmnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgf
iacvgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakl
taaaiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkc
vdlitpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqri
pgfvvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptrae
veaflaehs

    Sequence, based on observed residues (ATOM records): (download) 
    >4xdaA (A:)
mnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgfiac
vgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakltaa
aiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkcvdl
itpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqripgf
vvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptraevea
flaehs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4xdaB (B:)
gshmnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgf
iacvgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakl
taaaiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkc
vdlitpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqri
pgfvvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptrae
veaflaehs

    Sequence, based on observed residues (ATOM records): (download) 
    >4xdaB (B:)
mnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgfiac
vgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakltaa
aiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkcvdl
itpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqripgf
vvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptraevea
flaehs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4xdaC (C:)
gshmnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgf
iacvgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakl
taaaiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkc
vdlitpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqri
pgfvvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptrae
veaflaehs

    Sequence, based on observed residues (ATOM records): (download) 
    >4xdaC (C:)
mnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgfiac
vgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakltaa
aiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkcvdl
itpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqripgf
vvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptraevea
flaehs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4xdaD (D:)
gshmnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgf
iacvgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakl
taaaiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkc
vdlitpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqri
pgfvvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptrae
veaflaehs

    Sequence, based on observed residues (ATOM records): (download) 
    >4xdaD (D:)
mnklvvlgsvnadhvlqvpsfprpgetlhgrnyqvipggkganqavaaarmqadvgfiac
vgddsfginiresfkldgintagvklqpncptgiamiqvsdsgensicisaeanakltaa
aiepdlaairdaryllmqletpldgilkaaqeaktaktnvilnpaparelpdellkcvdl
itpneteaevltgitvyddssaqqaadalhckgieiviitlgskgvwlsqngrgqripgf
vvkatdttaagdtfngalvtgllqemplesaikfahaaaaisvtrfgaqtsiptraevea
flaehs