PDB entry 4u61

View 4u61 on RCSB PDB site
Description: Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with 6'-sialyllactose
Class: viral protein
Keywords: viral coat protein, jelly-roll fold, glycan binding, viral protein
Deposited on 2014-07-26, released 2015-08-05
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-09-02, with a file datestamp of 2015-08-28.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61a_
  • Chain 'B':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61b_
  • Chain 'C':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61c_
  • Chain 'D':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61d_
  • Chain 'E':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61e_
  • Chain 'F':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61f_
  • Chain 'G':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61g_
  • Chain 'H':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61h_
  • Chain 'I':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61i_
  • Chain 'J':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u61j_
  • Heterogens: GAL, SIA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4u61A (A:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61A (A:)
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmn
fhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpve
cwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdi
vgflvgkdgdmqyrglpryfnillrkrtvrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4u61B (B:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61B (B:)
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
kdgdmqyrglpryfnillrkrtvr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4u61C (C:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61C (C:)
evlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptyst
arinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnf
hmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvec
wcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdiv
gflvgkdgdmqyrglpryfnillrkrtvrn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4u61D (D:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61D (D:)
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
kdgdmqyrglpryfnillrkrtvr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4u61E (E:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61E (E:)
nievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeipty
starinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegm
nfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpv
ecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccd
ivgflvgkdgdmqyrglpryfnillrkrtvrn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4u61F (F:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61F (F:)
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
kdgdmqyrglpryfnillrkrtvr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4u61G (G:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61G (G:)
evlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptyst
arinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnf
hmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvec
wcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdiv
gflvgkdgdmqyrglpryfnillrkrtvrn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4u61H (H:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61H (H:)
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
kdgdmqyrglpryfnillrkrtvr

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4u61I (I:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61I (I:)
ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
tarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmn
fhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpve
cwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdi
vgflvgkdgdmqyrglpryfnillrkrtvrn

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4u61J (J:)
gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >4u61J (J:)
nievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeipty
starinlpmltltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
kdgdmqyrglpryfnillrkrtvr