PDB entry 4rk1
View 4rk1 on RCSB PDB site
Description: Crystal structure of LacI family transcriptional regulator from Enterococcus faecium, Target EFI-512930, with bound glucose
Class: transcription regulator
Keywords: sugar binding, transcription regulation, Enzyme Function Initiative, EFI, structural genomics, transcriptional factor, D-glucose, TRANSCRIPTION REGULATOR
Deposited on
2014-10-11, released
2014-10-29
The last revision prior to the SCOPe 2.04 freeze date was dated
2014-10-29, with a file datestamp of
2014-10-24.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.16
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ribose transcriptional regulator
Species: Enterococcus faecium DO [TaxId:333849]
Gene: rbsR, HMPREF0351_10453
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4rk1a_ - Chain 'B':
Compound: Ribose transcriptional regulator
Species: Enterococcus faecium DO [TaxId:333849]
Gene: rbsR, HMPREF0351_10453
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Ribose transcriptional regulator
Species: Enterococcus faecium DO [TaxId:333849]
Gene: rbsR, HMPREF0351_10453
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4rk1c_ - Chain 'D':
Compound: Ribose transcriptional regulator
Species: Enterococcus faecium DO [TaxId:333849]
Gene: rbsR, HMPREF0351_10453
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Ribose transcriptional regulator
Species: Enterococcus faecium DO [TaxId:333849]
Gene: rbsR, HMPREF0351_10453
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Ribose transcriptional regulator
Species: Enterococcus faecium DO [TaxId:333849]
Gene: rbsR, HMPREF0351_10453
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4rk1f_ - Heterogens: RIB, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4rk1A (A:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk
Sequence, based on observed residues (ATOM records): (download)
>4rk1A (A:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadieylaeltrrgvdgfiiatsa
vstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvyp
enppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfalnd
elafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllldr
iqfpekeweekrlpvrfekrfstaplk
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4rk1C (C:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk
Sequence, based on observed residues (ATOM records): (download)
>4rk1C (C:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadsieylaeltrrgvdgfiiats
avstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvy
penppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfaln
delafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllld
riqfpekeweekrlpvrfekrfstaplk
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4rk1F (F:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk
Sequence, based on observed residues (ATOM records): (download)
>4rk1F (F:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadsieylaeltrrgvdgfiiats
avstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvy
penppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfaln
delafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllld
riqfpekeweekrlpvrfekrfstaplk