PDB entry 4pgp

View 4pgp on RCSB PDB site
Description: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO ALASKENSIS G20 (Dde_0634, TARGET EFI-510120) WITH BOUND 3-INDOLE ACETIC ACID
Class: solute-binding protein
Keywords: TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, SOLUTE-BINDING PROTEIN
Deposited on 2014-05-02, released 2014-06-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Extracellular solute-binding protein, family 7
    Species: Desulfovibrio desulfuricans [TaxId:207559]
    Gene: Dde_0634
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pgpa_
  • Chain 'B':
    Compound: Extracellular solute-binding protein, family 7
    Species: Desulfovibrio desulfuricans [TaxId:207559]
    Gene: Dde_0634
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pgpb_
  • Chain 'C':
    Compound: Extracellular solute-binding protein, family 7
    Species: Desulfovibrio desulfuricans [TaxId:207559]
    Gene: Dde_0634
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pgpc_
  • Chain 'D':
    Compound: Extracellular solute-binding protein, family 7
    Species: Desulfovibrio desulfuricans [TaxId:207559]
    Gene: Dde_0634
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pgpd_
  • Heterogens: IAC, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4pgpA (A:)
mhhhhhhssgvdlgtenlyfqsmqpvtlnyanfppastfpciqmeqwahevrtrtrgkvd
vltypggtllgarnmlrgvmsgqadigcislayhpgvfpvmsvfelplgftsaeaassvl
welysglrpaelervkvltmftsapshfmtvtpvrslrdlqgmeirgagtlsaileklga
tpvsmpmpevpeavqkgiikglftsldvmkdmnfaemtghvtradqavypfavimnreaw
erlspdvqqvldglaaehaawtgryldahvqdsmrwaeekhgvqvhtlpeediaamrrsv
qplfdawaqraadkgadpdavmrtvdalkaqygg

    Sequence, based on observed residues (ATOM records): (download) 
    >4pgpA (A:)
pvtlnyanfppastfpciqmeqwahevrtrtrgkvdvltypggtllgarnmlrgvmsgqa
digcislayhpgvfpvmsvfelplgftsaeaassvlwelysglrpaelervkvltmftsa
pshfmtvtpvrslrdlqgmeirgagtlsaileklgatpvsmpmpevpeavqkgiikglft
sldvmkdmnfaemtghvtradqavypfavimnreawerlspdvqqvldglaaehaawtgr
yldahvqdsmrwaeekhgvqvhtlpeediaamrrsvqplfdawaqraadkgadpdavmrt
vdalkaqy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4pgpB (B:)
mhhhhhhssgvdlgtenlyfqsmqpvtlnyanfppastfpciqmeqwahevrtrtrgkvd
vltypggtllgarnmlrgvmsgqadigcislayhpgvfpvmsvfelplgftsaeaassvl
welysglrpaelervkvltmftsapshfmtvtpvrslrdlqgmeirgagtlsaileklga
tpvsmpmpevpeavqkgiikglftsldvmkdmnfaemtghvtradqavypfavimnreaw
erlspdvqqvldglaaehaawtgryldahvqdsmrwaeekhgvqvhtlpeediaamrrsv
qplfdawaqraadkgadpdavmrtvdalkaqygg

    Sequence, based on observed residues (ATOM records): (download) 
    >4pgpB (B:)
pvtlnyanfppastfpciqmeqwahevrtrtrgkvdvltypggtllgarnmlrgvmsgqa
digcislayhpgvfpvmsvfelplgftsaeaassvlwelysglrpaelervkvltmftsa
pshfmtvtpvrslrdlqgmeirgagtlsaileklgatpvsmpmpevpeavqkgiikglft
sldvmkdmnfaemtghvtradqavypfavimnreawerlspdvqqvldglaaehaawtgr
yldahvqdsmrwaeekhgvqvhtlpeediaamrrsvqplfdawaqraadkgadpdavmrt
vdalkaqyg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4pgpC (C:)
mhhhhhhssgvdlgtenlyfqsmqpvtlnyanfppastfpciqmeqwahevrtrtrgkvd
vltypggtllgarnmlrgvmsgqadigcislayhpgvfpvmsvfelplgftsaeaassvl
welysglrpaelervkvltmftsapshfmtvtpvrslrdlqgmeirgagtlsaileklga
tpvsmpmpevpeavqkgiikglftsldvmkdmnfaemtghvtradqavypfavimnreaw
erlspdvqqvldglaaehaawtgryldahvqdsmrwaeekhgvqvhtlpeediaamrrsv
qplfdawaqraadkgadpdavmrtvdalkaqygg

    Sequence, based on observed residues (ATOM records): (download) 
    >4pgpC (C:)
pvtlnyanfppastfpciqmeqwahevrtrtrgkvdvltypggtllgarnmlrgvmsgqa
digcislayhpgvfpvmsvfelplgftsaeaassvlwelysglrpaelervkvltmftsa
pshfmtvtpvrslrdlqgmeirgagtlsaileklgatpvsmpmpevpeavqkgiikglft
sldvmkdmnfaemtghvtradqavypfavimnreawerlspdvqqvldglaaehaawtgr
yldahvqdsmrwaeekhgvqvhtlpeediaamrrsvqplfdawaqraadkgadpdavmrt
vdalkaqygg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4pgpD (D:)
mhhhhhhssgvdlgtenlyfqsmqpvtlnyanfppastfpciqmeqwahevrtrtrgkvd
vltypggtllgarnmlrgvmsgqadigcislayhpgvfpvmsvfelplgftsaeaassvl
welysglrpaelervkvltmftsapshfmtvtpvrslrdlqgmeirgagtlsaileklga
tpvsmpmpevpeavqkgiikglftsldvmkdmnfaemtghvtradqavypfavimnreaw
erlspdvqqvldglaaehaawtgryldahvqdsmrwaeekhgvqvhtlpeediaamrrsv
qplfdawaqraadkgadpdavmrtvdalkaqygg

    Sequence, based on observed residues (ATOM records): (download) 
    >4pgpD (D:)
pvtlnyanfppastfpciqmeqwahevrtrtrgkvdvltypggtllgarnmlrgvmsgqa
digcislayhpgvfpvmsvfelplgftsaeaassvlwelysglrpaelervkvltmftsa
pshfmtvtpvrslrdlqgmeirgagtlsaileklgatpvsmpmpevpeavqkgiikglft
sldvmkdmnfaemtghvtradqavypfavimnreawerlspdvqqvldglaaehaawtgr
yldahvqdsmrwaeekhgvqvhtlpeediaamrrsvqplfdawaqraadkgadpdavmrt
vdalkaqygg