PDB entry 4pch

View 4pch on RCSB PDB site
Description: Structure of Human Polyomavirus 7 (HPyV7) VP1 pentamer
Class: viral protein
Keywords: major viral capsid protein, jelly-roll topology, attachment to host-cell receptors, VIRAL PROTEIN
Deposited on 2014-04-15, released 2014-08-06
The last revision prior to the SCOPe 2.04 freeze date was dated 2014-08-06, with a file datestamp of 2014-08-01.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.171
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Polyomavirus HPyV7 [TaxId:746831]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: vp1
    Species: Polyomavirus HPyV7 [TaxId:746831]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4pchb_
  • Chain 'C':
    Compound: vp1
    Species: Polyomavirus HPyV7 [TaxId:746831]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4pchc_
  • Chain 'D':
    Compound: vp1
    Species: Polyomavirus HPyV7 [TaxId:746831]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4pchd_
  • Chain 'E':
    Compound: vp1
    Species: Polyomavirus HPyV7 [TaxId:746831]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4pchB (B:)
gshmggvevldtvpltedtqykveavllpnfgkaattgnfqsrglpytmsdtlgpgaalc
ysvavinlpeipdamcedtmivweayrletellfapqmassgyqrangtlagiegtqlyf
wacgggpldviginpdperlkvnealegpgnsdvaslqalrkqvnaanfpvelwvadptk
ndntryfgrvvgggvtppvvsygnqsttplidengvgilctfgsvyltsadmvgmtglpg
lptlsadysnqrtvqagygrffrvhcrqrrikq

    Sequence, based on observed residues (ATOM records): (download) 
    >4pchB (B:)
vevldtvpltedtqykveavllpnfgkaattgnfqsrglpytmsdtlgpgaalcysvavi
nlpeipdamcedtmivweayrletellfapqmassgyqrangtlagiegtqlyfwacggg
pldviginpdperlkvnealegpgnsdvaslqalrkqvnaanfpvelwvadptkndntry
fgrvvgggvtppvvsygnqsttplidengvgilctfgsvyltsadmvgmtglpglptlsa
dysnqrtvqagygrffrvhcrqrrik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4pchC (C:)
gshmggvevldtvpltedtqykveavllpnfgkaattgnfqsrglpytmsdtlgpgaalc
ysvavinlpeipdamcedtmivweayrletellfapqmassgyqrangtlagiegtqlyf
wacgggpldviginpdperlkvnealegpgnsdvaslqalrkqvnaanfpvelwvadptk
ndntryfgrvvgggvtppvvsygnqsttplidengvgilctfgsvyltsadmvgmtglpg
lptlsadysnqrtvqagygrffrvhcrqrrikq

    Sequence, based on observed residues (ATOM records): (download) 
    >4pchC (C:)
evldtvpltedtqykveavllpnfgkaattgnfqsrglpytmsdtlgpgaalcysvavin
lpeipdamcedtmivweayrletellfapqmassgyqrangtlagiegtqlyfwacgggp
ldviginpdperlkvnealegpgnsdvaslqalrkqvnaanfpvelwvadptkndntryf
grvvgggvtppvvsygnqsttplidengvgilctfgsvyltsadmvgmtglpglptlsad
ysnqrtvqagygrffrvhcrqrrik

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4pchD (D:)
gshmggvevldtvpltedtqykveavllpnfgkaattgnfqsrglpytmsdtlgpgaalc
ysvavinlpeipdamcedtmivweayrletellfapqmassgyqrangtlagiegtqlyf
wacgggpldviginpdperlkvnealegpgnsdvaslqalrkqvnaanfpvelwvadptk
ndntryfgrvvgggvtppvvsygnqsttplidengvgilctfgsvyltsadmvgmtglpg
lptlsadysnqrtvqagygrffrvhcrqrrikq

    Sequence, based on observed residues (ATOM records): (download) 
    >4pchD (D:)
evldtvpltedtqykveavllpnfgnfqsrglpytmsdtlgpgaalcysvavinlpeivw
eayrletellfapqmassgyqrangtlagiegtqlyfwacgggpldviginpdperlkvn
ealegpgnsdvaslqalrkqvnaanfpvelwvadptkndntryfgrvvgggvtppvvsyg
nqsttplidengvgilctfgsvyltsadmvgmtglpglptlsadysnqrtvqagygrffr
vhcrqrri

  • Chain 'E':
    No sequence available.