PDB entry 4oe7

View 4oe7 on RCSB PDB site
Description: Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
Class: lyase
Keywords: tim barrel, aldolase type I, sugar binding, metal coordination, schiff base, LYASE
Deposited on 2014-01-12, released 2014-12-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4oe7a_
  • Chain 'B':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4oe7b_
  • Chain 'C':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4oe7c_
  • Chain 'D':
    Compound: Probable 2-keto-3-deoxy-galactonate aldolase YagE
    Species: Escherichia coli [TaxId:83333]
    Gene: b0268, JW0261, yagE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4oe7d_
  • Heterogens: EDO, GOL, MG, GXT, PYR, GXP, GXS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4oe7A (A:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4oe7A (A:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4oe7B (B:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4oe7B (B:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4oe7C (C:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4oe7C (C:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4oe7D (D:)
mgsshhhhhhsagenlyfqgqqgdlmpqsalftgiippvstiftadgqldkpgtaalidd
likagvdglfflgsggefsqlgaeerkaiarfaidhvdrrvpvligtggtnaretielsq
haqqagadgivvinpyywkvseanliryfeqvadsvtlpvmlynfpaltgqdltpalvkt
ladsrsniigikdtidsvahlrsmihtvkgahphftvlcgyddhlfntlllggdgaisas
gnfapqvsvnllkawrdgdvakaagyhqtllqipqmyqldtpfvnvikeaivlcgrpvst
hvlppaspldeprkaqlktllqqlklccgrtrappppplrsgc

    Sequence, based on observed residues (ATOM records): (download) 
    >4oe7D (D:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc