PDB entry 4odx

View 4odx on RCSB PDB site
Description: 4E10 germline encoded precursor no.7 in complex with epitope scaffold T117
Class: immune system
Keywords: HIV, 4E10, GEP, germline, antibody, Fv, immunoglobulin, 4E10 epitope, IMMUNE SYSTEM
Deposited on 2014-01-10, released 2014-10-08
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-10-08, with a file datestamp of 2014-10-03.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.281
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GEP7 Fv heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODX (Start-128)
    Domains in SCOPe 2.05: d4odxa_
  • Chain 'B':
    Compound: GEP7 Fv light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODX (0-End)
    Domains in SCOPe 2.05: d4odxb_
  • Chain 'H':
    Compound: GEP7 Fv heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODX (Start-128)
    Domains in SCOPe 2.05: d4odxh_
  • Chain 'L':
    Compound: GEP7 Fv light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODX (0-End)
    Domains in SCOPe 2.05: d4odxl_
  • Chain 'X':
    Compound: 4E10 epitope scaffold T117
    Species: artificial gene [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODX
    Domains in SCOPe 2.05: d4odxx_
  • Chain 'Y':
    Compound: 4E10 epitope scaffold T117
    Species: artificial gene [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODX
    Domains in SCOPe 2.05: d4odxy_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4odxA (A:)
gsqvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgta
nyaqkfqgrvtitadkststaymelsslrsedtavyycaregttgwgwlgkpigafqhwg
qgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >4odxA (A:)
qvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgtany
aqkfqgrvtitadkststaymelsslrsedtavyycaregttgwgwlgkpigafqhwgqg
tlvtvss

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4odxB (B:)
eivltqspgtlslspgeratlscrasqsvsssylawyqqkpgqaprlliygassratgip
drfsgsgsgtdftltisrlepedfavyycqqygsspstfgqgtkveikrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4odxB (B:)
eivltqspgtlslspgeratlscrasqsvsssylawyqqkpgqaprlliygassratgip
drfsgsgsgtdftltisrlepedfavyycqqygsspstfgqgtkvei

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4odxH (H:)
gsqvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgta
nyaqkfqgrvtitadkststaymelsslrsedtavyycaregttgwgwlgkpigafqhwg
qgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >4odxH (H:)
qvqlvqsgaevkkpgssvkvsckasggtfssyaiswvrqapgqglewmggiipifgtany
aqkfqgrvtitadkststaymelsslrsedtavyycaregttgwgwlgkpigafqhwgqg
tlvtvss

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4odxL (L:)
eivltqspgtlslspgeratlscrasqsvsssylawyqqkpgqaprlliygassratgip
drfsgsgsgtdftltisrlepedfavyycqqygsspstfgqgtkveikrlvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4odxL (L:)
eivltqspgtlslspgeratlscrasqsvsssylawyqqkpgqaprlliygassratgip
drfsgsgsgtdftltisrlepedfavyycqqygsspstfgqgtkveikr

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >4odxX (X:)
hhhhhhnamqgihfrrhyvrhlpkevsqndiikalasplindgmvvsdfadhvitreqnf
ptglpvepvgvaiphtdskyvrqnaisvgilaepvnfedaggepdpvpvrvvfmlalgnw
fditnvlwwimdviqdedfmqqllvmnddeiyqsiytrise

    Sequence, based on observed residues (ATOM records): (download) 
    >4odxX (X:)
mqgihfrrhyvrhlpkevsqndiikalasplindgmvvsdfadhvitreqnfptglpvep
vgvaiphtdskyvrqnaisvgilaepvnfedaggepdpvpvrvvfmlalgnwfditnvlw
wimdviqdedfmqqllvmnddeiyqsiytris

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >4odxY (Y:)
hhhhhhnamqgihfrrhyvrhlpkevsqndiikalasplindgmvvsdfadhvitreqnf
ptglpvepvgvaiphtdskyvrqnaisvgilaepvnfedaggepdpvpvrvvfmlalgnw
fditnvlwwimdviqdedfmqqllvmnddeiyqsiytrise

    Sequence, based on observed residues (ATOM records): (download) 
    >4odxY (Y:)
amqgihfrrhyvrhlpkevsqndiikalasplindgmvvsdfadhvitreqnfptglpve
pvgvaiphtdskyvrqnaisvgilaepvnfedaggepdpvpvrvvfmlalgnwfditnvl
wwimdviqdedfmqqllvmnddeiyqsiytris