PDB entry 4o4r

View 4o4r on RCSB PDB site
Description: Murine Norovirus RdRp in complex with PPNDS
Class: viral protein/replication inhibitor
Keywords: RNA-dependent-RNA-polymerase, RNA binding, VIRAL PROTEIN-REPLICATION INHIBITOR complex
Deposited on 2013-12-19, released 2014-11-05
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-11-05, with a file datestamp of 2014-10-31.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.194
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-dependent-RNA-polymerase
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4o4ra_
  • Chain 'B':
    Compound: RNA-dependent-RNA-polymerase
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4o4rb_
  • Chain 'C':
    Compound: RNA-dependent-RNA-polymerase
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4o4rc_
  • Heterogens: 20V, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4o4rA (A:)
mlprpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslq
qvmrdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssg
ypyhkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkik
krllwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmd
adytrwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglps
gcpcttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytm
alrrygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkg
pnhqnpfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrs
vlrwvrfgtmdaetpqersavfvnedelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o4rA (A:)
rpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqqvm
rdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgypy
hkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikkrl
lwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmdady
trwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsgcp
cttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmalr
rygllptradplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpnhqnpf
etlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqvvprhrsvlrwvrfg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4o4rB (B:)
mlprpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslq
qvmrdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssg
ypyhkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkik
krllwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmd
adytrwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglps
gcpcttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytm
alrrygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkg
pnhqnpfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrs
vlrwvrfgtmdaetpqersavfvnedelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o4rB (B:)
lprpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqq
vmrdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgy
pyhkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikk
rllwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmda
dytrwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsg
cpcttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytma
lrrygllptradkegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpn
hqnpfetlpgrpsqlmallgeaamhgekyyrtvasrvskeaaqsgvvprhrsvlrwvrfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4o4rC (C:)
mlprpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslq
qvmrdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssg
ypyhkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkik
krllwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmd
adytrwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglps
gcpcttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytm
alrrygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkg
pnhqnpfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrs
vlrwvrfgtmdaetpqersavfvnedelehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o4rC (C:)
psgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqqvmr
dqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgypyh
kqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikkrll
wgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmdadyt
rwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsgcpc
ttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmalrr
ygllptrgplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpnhqnpfet
lpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqvvprhrsvlrwvrfg