PDB entry 4lhu
View 4lhu on RCSB PDB site
Description: Crystal Structure of 9C2 TCR bound to CD1d
Class: immune system
Keywords: NKT cells, GammaDelta TCR, CD1d, lipid recognition, PBS-44, IMMUNE SYSTEM
Deposited on
2013-07-01, released
2013-10-02
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.87 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d
Species: Homo sapiens [TaxId:9606]
Gene: CD1D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lhua1, d4lhua2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.08: d4lhub1, d4lhub2 - Chain 'D':
Compound: 9C2 TCR delta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lhud1, d4lhud2 - Chain 'G':
Compound: 9C2 TCR gamma chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4lhug1, d4lhug2 - Heterogens: NAG, BMA, MG, JLS, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4lhuA (A:)
rlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfsdqqwet
lqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhpgnasnnffhvafqgkdils
fqgtsweptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgkselkkqv
kpkawlsrgpspgpgrlllvchvsgfypkpvwvkwmrgeqeqqgtqpgdilpnadetwyl
ratldvvageaaglscrvkhsslegqdivlywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4lhuA (A:)
rlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfsdqqwet
lqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhpgnasnnffhvafqgkdils
fqgtsweptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgkselkkqv
kpkawlsrgpspgpgrlllvchvsgfypkpvwvkwmrgeqeqqgtqpgdilpnadetwyl
ratldvvageaaglscrvkhsslegqdivlyw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4lhuB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4lhuD (D:)
etgaqkvtqaqssvsmpvrkavtlnclyetswwsyyifwykqlpskemiflirqgsdeqn
aksgrysvnfkkaaksvaltisalqledsakyfcalgdpgglntdklifgkgtrvtvepr
sqphtkpsvfvmkngtnvaclvkefypkdirinlvsskkitefdpaivispsgkynavkl
gkyedsnsvtcsvqhdnktvhstdfevktdstdhvkpketentkqpsksasglvpr
Sequence, based on observed residues (ATOM records): (download)
>4lhuD (D:)
qkvtqaqssvsmpvrkavtlnclyetswwsyyifwykqlpskemiflirqgsdeqnaksg
rysvnfkkaaksvaltisalqledsakyfcalgdpgglntdklifgkgtrvtveprsqph
tkpsvfvmkngtnvaclvkefypkdirinlvsskkitefdpaivispsgkynavklgkye
dsnsvtcsvqhdnktvhstdfe
- Chain 'G':
Sequence, based on SEQRES records: (download)
>4lhuG (G:)
etgssnleggtksvtrptrssaeitcdltvinafyihwylhqegkapqrllyydvsnskd
vlesglspgkyythtprrwswililrnliendsgvyycatwdrgnpkthyykklfgsgtt
lvvtdkqldadvspkptiflpsiaetklqkagtylcllekffpdvikihwqekksntilg
sqegntmktndtymkfswltvpeesldkehrcivrhennkngvdqeiifppiktdvitmd
pkdnasglvpr
Sequence, based on observed residues (ATOM records): (download)
>4lhuG (G:)
gtksvtrptrssaeitcdltvinafyihwylhqegkapqrllyydvsnskdvlesglspg
kyythtprrwswililrnliendsgvyycatwdrgnpkthyykklfgsgttlvvtdkqld
advspkptiflpsiaetklqkagtylcllekffpdvikihwqekksntilgsqegntmkt
ndtymkfswltvpeesldkehrcivrhennkngvdqeiifppiktdv