PDB entry 4jce

View 4jce on RCSB PDB site
Description: L54F Variant of JC Polyomavirus Major Capsid Protein VP1
Class: Viral protein
Keywords: beta-sandwich, jelly roll topology, viral protein, major capsid protein, PML-associated VP1 mutation
Deposited on 2013-02-21, released 2013-08-14
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-08-14, with a file datestamp of 2013-08-09.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.151
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (36)
    Domains in SCOPe 2.04: d4jcea_
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (36)
    Domains in SCOPe 2.04: d4jceb_
  • Chain 'C':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (36)
    Domains in SCOPe 2.04: d4jcec_
  • Chain 'D':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (36)
    Domains in SCOPe 2.04: d4jced_
  • Chain 'E':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (36)
    Domains in SCOPe 2.04: d4jcee_
  • Heterogens: GOL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jceA (A:)
gshmggvevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jceA (A:)
vevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysva
riplpnlnnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvgge
alelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnen
tryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsq
qwrglsryfkvqlrkrrvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4jceB (B:)
gshmggvevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jceB (B:)
vevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4jceC (C:)
gshmggvevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jceC (C:)
evlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4jceD (D:)
gshmggvevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jceD (D:)
vevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4jceE (E:)
gshmggvevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jceE (E:)
vevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk