PDB entry 4j6y

View 4j6y on RCSB PDB site
Description: Hfq from Pseudomonas aeruginosa crystallized in GTP presence
Class: RNA binding protein
Keywords: LSM, RNA binding protein, RNA chaperone, sRNA, mRNA
Deposited on 2013-02-12, released 2013-07-31
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-08-21, with a file datestamp of 2013-08-16.
Experiment type: XRAY
Resolution: 2.14 Å
R-factor: 0.174
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein hfq
    Species: Pseudomonas aeruginosa [TaxId:208964]
    Gene: hfq, PA4944
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4j6ya_
  • Chain 'B':
    Compound: Protein hfq
    Species: Pseudomonas aeruginosa [TaxId:208964]
    Gene: hfq, PA4944
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4j6yb_
  • Chain 'C':
    Compound: Protein hfq
    Species: Pseudomonas aeruginosa [TaxId:208964]
    Gene: hfq, PA4944
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4j6yc_
  • Chain 'D':
    Compound: Protein hfq
    Species: Pseudomonas aeruginosa [TaxId:208964]
    Gene: hfq, PA4944
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4j6yd_
  • Chain 'E':
    Compound: Protein hfq
    Species: Pseudomonas aeruginosa [TaxId:208964]
    Gene: hfq, PA4944
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4j6ye_
  • Chain 'F':
    Compound: Protein hfq
    Species: Pseudomonas aeruginosa [TaxId:208964]
    Gene: hfq, PA4944
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4j6yf_
  • Heterogens: CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4j6yA (A:)
mskghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhais
tvvpsrpvrlpsgdqpaepgna

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6yA (A:)
slqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhaistvvps
rpvrlp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4j6yB (B:)
mskghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhais
tvvpsrpvrlpsgdqpaepgna

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6yB (B:)
hslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhaistvvp
srpvrl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4j6yC (C:)
mskghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhais
tvvpsrpvrlpsgdqpaepgna

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6yC (C:)
ghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhaistvv
psrpvrl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4j6yD (D:)
mskghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhais
tvvpsrpvrlpsgdqpaepgna

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6yD (D:)
slqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhaistvvps
rpvrlp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4j6yE (E:)
mskghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhais
tvvpsrpvrlpsgdqpaepgna

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6yE (E:)
ghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhaistvv
psrpvrl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4j6yF (F:)
mskghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhais
tvvpsrpvrlpsgdqpaepgna

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6yF (F:)
ghslqdpylntlrkervpvsiylvngiklqgqiesfdqfvillkntvsqmvykhaistvv
psrpvrl