PDB entry 4j6m

View 4j6m on RCSB PDB site
Description: Crystal structure of calcium2+-free wild-type CD23 lectin domain (crystal form D)
Class: immune system
Keywords: immunoglobulin fold lectin, antibody receptor, immune system
Deposited on 2013-02-11, released 2013-08-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-08-28, with a file datestamp of 2013-08-23.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: 0.21
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6ma_
  • Chain 'B':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6mb_
  • Chain 'C':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6mc_
  • Chain 'D':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6md_
  • Chain 'E':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6me_
  • Chain 'F':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6mf_
  • Chain 'G':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6mg_
  • Chain 'H':
    Compound: Low affinity immunoglobulin epsilon Fc receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD23A, CLEC4J, FCE2, FCER2, IGEBF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4j6mh_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4j6mA (A:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mA (A:)
gfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhash
tgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrk
lgawvcdrlatctpp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4j6mB (B:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mB (B:)
gfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhash
tgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrk
lgawvcdrlatctpp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4j6mC (C:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mC (C:)
gfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhash
tgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrk
lgawvcdrlatctpp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4j6mD (D:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mD (D:)
gfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhash
tgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrk
lgawvcdrlatctp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4j6mE (E:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mE (E:)
gfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhash
tgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrk
lgawvcdrlatctp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4j6mF (F:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mF (F:)
gfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhash
tgswiglrnlefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrklgaw
vcdrlatctpp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4j6mG (G:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mG (G:)
cntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhashtgs
wiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrklga
wvcdrlatc

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4j6mH (H:)
sgfvcntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhas
htgswiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdr
klgawvcdrlatctppasegsae

    Sequence, based on observed residues (ATOM records): (download) 
    >4j6mH (H:)
cntcpekwinfqrkcyyfgkgtkqwvharyacddmegqlvsihspeeqdfltkhashtgs
wiglrnldlkgefiwvdgshvdysnwapgeptsrsqgedcvmmrgsgrwndafcdrklga
wvcdrlatc