PDB entry 4ip0

View 4ip0 on RCSB PDB site
Description: X-Ray Structure of the Complex Uridine Phosphorylase from Vibrio cholerae with Phosphate Ion at 1.29 A Resolution
Class: transferase
Keywords: rossmann fold, transferase, phosphorylation, nucleoside
Deposited on 2013-01-09, released 2014-08-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-08-13, with a file datestamp of 2014-08-08.
Experiment type: XRAY
Resolution: 1.29 Å
R-factor: 0.173
AEROSPACI score: 0.67 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ip0a_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ip0b_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ip0c_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ip0d_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ip0e_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ip0f_
  • Heterogens: NA, EDO, PO4, SO4, EOH, CL, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ip0A (A:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ip0A (A:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ip0B (B:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ip0B (B:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ip0C (C:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ip0C (C:)
tvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvvv
cstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhfa
pmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgsm
kewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsikv
vveaarkmlk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ip0D (D:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ip0D (D:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ip0E (E:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ip0E (E:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ip0F (F:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ip0F (F:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk