PDB entry 4emb

View 4emb on RCSB PDB site
Description: Crystal structure of a phosphoglycerate mutase gpmA from Borrelia burgdorferi B31
Class: isomerase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, lyme disease, tick-borne pathogen, 2-phosphoglycerate, 3-phosphoglycerate, glycolysis, ISOMERASE
Deposited on 2012-04-11, released 2012-04-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-04-25, with a file datestamp of 2012-04-20.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.177
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Borrelia burgdorferi [TaxId:139]
    Gene: BB_0658, gmpA, gpmA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O51602 (26-End)
      • expression tag (25)
    Domains in SCOPe 2.06: d4emba1, d4emba2
  • Chain 'B':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Borrelia burgdorferi [TaxId:139]
    Gene: BB_0658, gmpA, gpmA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O51602 (26-End)
      • expression tag (25)
    Domains in SCOPe 2.06: d4embb1, d4embb2
  • Chain 'C':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Borrelia burgdorferi [TaxId:139]
    Gene: BB_0658, gmpA, gpmA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O51602 (26-End)
      • expression tag (25)
    Domains in SCOPe 2.06: d4embc1, d4embc2
  • Chain 'D':
    Compound: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
    Species: Borrelia burgdorferi [TaxId:139]
    Gene: BB_0658, gmpA, gpmA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O51602 (26-End)
      • expression tag (25)
    Domains in SCOPe 2.06: d4embd1, d4embd2
  • Heterogens: EDO, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4embA (A:)
mahhhhhhmgtleaqtqgpgsmlgdfmyklvlvrhgesewnkenlftgwtdvklsdkgid
eaveaglllkqegysfdiafssllsrandtlniilrelgqsyisvkktwrlnerhygalq
glnksetaakygedkvliwrrsydvppmsldesddrhpikdprykhipkrelpsteclkd
tvarvipywtdeiakevlegkkvivaahgnslralvkyfdnlseedvlklniptgiplvy
eldkdlnpikhyylgdeskikkamesvasqgklk

    Sequence, based on observed residues (ATOM records): (download) 
    >4embA (A:)
fmyklvlvrhgesewnkenlftgwtdvklsdkgideaveaglllkqegysfdiafsslls
randtlniilrelgqsyisvkktwrlnerhygalqglnksetaakygedkvliwrrsydv
ppmsldesddrhpikdprykhipkrelpsteclkdtvarvipywtdeiakevlegkkviv
aahgnslralvkyfdnlseedvlklniptgiplvyeldkdlnpikhyylgdeskikkame
svasq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4embB (B:)
mahhhhhhmgtleaqtqgpgsmlgdfmyklvlvrhgesewnkenlftgwtdvklsdkgid
eaveaglllkqegysfdiafssllsrandtlniilrelgqsyisvkktwrlnerhygalq
glnksetaakygedkvliwrrsydvppmsldesddrhpikdprykhipkrelpsteclkd
tvarvipywtdeiakevlegkkvivaahgnslralvkyfdnlseedvlklniptgiplvy
eldkdlnpikhyylgdeskikkamesvasqgklk

    Sequence, based on observed residues (ATOM records): (download) 
    >4embB (B:)
fmyklvlvrhgesewnkenlftgwtdvklsdkgideaveaglllkqegysfdiafsslls
randtlniilrelgqsyisvkktwrlnerhygalqglnksetaakygedkvliwrrsydv
ppmsldesddrhpikdprykhipkrelpsteclkdtvarvipywtdeiakevlegkkviv
aahgnslralvkyfdnlseedvlklniptgiplvyeldkdlnpikhyylgdeskikkame
s

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4embC (C:)
mahhhhhhmgtleaqtqgpgsmlgdfmyklvlvrhgesewnkenlftgwtdvklsdkgid
eaveaglllkqegysfdiafssllsrandtlniilrelgqsyisvkktwrlnerhygalq
glnksetaakygedkvliwrrsydvppmsldesddrhpikdprykhipkrelpsteclkd
tvarvipywtdeiakevlegkkvivaahgnslralvkyfdnlseedvlklniptgiplvy
eldkdlnpikhyylgdeskikkamesvasqgklk

    Sequence, based on observed residues (ATOM records): (download) 
    >4embC (C:)
fmyklvlvrhgesewnkenlftgwtdvklsdkgideaveaglllkqegysfdiafsslls
randtlniilrelgqsyisvkktwrlnerhygalqglnksetaakygedkvliwrrsydv
ppmsldesddrhpikdprykhipkrelpsteclkdtvarvipywtdeiakevlegkkviv
aahgnslralvkyfdnlseedvlklniptgiplvyeldkdlnpikhyylgdeskikkame
svas

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4embD (D:)
mahhhhhhmgtleaqtqgpgsmlgdfmyklvlvrhgesewnkenlftgwtdvklsdkgid
eaveaglllkqegysfdiafssllsrandtlniilrelgqsyisvkktwrlnerhygalq
glnksetaakygedkvliwrrsydvppmsldesddrhpikdprykhipkrelpsteclkd
tvarvipywtdeiakevlegkkvivaahgnslralvkyfdnlseedvlklniptgiplvy
eldkdlnpikhyylgdeskikkamesvasqgklk

    Sequence, based on observed residues (ATOM records): (download) 
    >4embD (D:)
fmyklvlvrhgesewnkenlftgwtdvklsdkgideaveaglllkqegysfdiafsslls
randtlniilrelgqsyisvkktwrlnerhygalqglnksetaakygedkvliwrrsydv
ppmsldesddrhpikdprykhipkrelpsteclkdtvarvipywtdeiakevlegkkviv
aahgnslralvkyfdnlseedvlklniptgiplvyeldkdlnpikhyylgdeskikkame
s