PDB entry 4dr8

View 4dr8 on RCSB PDB site
Description: Crystal structure of a peptide deformylase from Synechococcus elongatus
Class: hydrolase
Keywords: hydrolase
Deposited on 2012-02-17, released 2013-03-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-07-10, with a file datestamp of 2013-07-05.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.164
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4dr8a_
  • Chain 'B':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4dr8b_
  • Chain 'C':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4dr8c_
  • Chain 'D':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4dr8d_
  • Heterogens: ZN, EDO, FMT, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dr8A (A:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr8A (A:)
taavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgig
laapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldver
peivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfa
vqavrpva

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dr8B (B:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr8B (B:)
avairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgigla
apqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldverpe
ivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavq
avrpvaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4dr8C (C:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr8C (C:)
avairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgigla
apqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldverpe
ivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavq
avrpv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4dr8D (D:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr8D (D:)
airvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgiglaap
qvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldverpeiv
evsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavqav
rpv