PDB entry 4dn8

View 4dn8 on RCSB PDB site
Description: Structure of porcine surfactant protein D neck and carbohydrate recognition domain complexed with mannose
Class: sugar binding protein
Keywords: collectin, lectin, carbohydrate/sugar binding, lung surfactant, SUGAR BINDING PROTEIN
Deposited on 2012-02-08, released 2012-06-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-08-22, with a file datestamp of 2012-08-17.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.203
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pulmonary surfactant-associated protein D
    Species: Sus scrofa [TaxId:9823]
    Gene: SFTPD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9N1X4 (Start-155)
      • engineered mutation (100)
    Domains in SCOPe 2.06: d4dn8a1
  • Heterogens: CA, BMA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dn8A (A:)
gitalrqqvetlqgqvqrlqkafsqykkvelfpngrgvgekifktggfektfqdaqqvct
qaggqmasprsetenealsqlvtaqnkaaflsmtdiktegqftyptgeplvyanwapgep
nnnggssgaencveifpngkwndkacgelrlvicef

    Sequence, based on observed residues (ATOM records): (download) 
    >4dn8A (A:)
italrqqvetlqgqvqrlqkafsqykkvelfpngrgvgekifktggfektfqdaqqvctq
aggqmasprsetenealsqlvtaqnkaaflsmtdiktegqftyptgeplvyanwapgepn
nnggssgaencveifpngkwndkacgelrlvicef