PDB entry 4ai5

View 4ai5 on RCSB PDB site
Description: Crystal structure of Y16F of 3-methyladenine DNA glycosylase I (TAG) in complex with 3-methyladenine
Class: hydrolase
Keywords: hydrolase, 3-methyladenine recognition, DNA repair, 3-methyladenine tautomer
Deposited on 2012-02-08, released 2012-02-15
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-06-20, with a file datestamp of 2012-06-15.
Experiment type: XRAY
Resolution: 2.22 Å
R-factor: 0.18458
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-3-methyladenine glycosylase I
    Species: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MSSA476 [TaxId:282459]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G8R1 (2-187)
      • expression tag (0-1)
      • engineered mutation (17)
    Domains in SCOPe 2.05: d4ai5a_
  • Chain 'B':
    Compound: DNA-3-methyladenine glycosylase I
    Species: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MSSA476 [TaxId:282459]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G8R1 (2-187)
      • engineered mutation (17)
    Domains in SCOPe 2.05: d4ai5b_
  • Chain 'C':
    Compound: DNA-3-methyladenine glycosylase I
    Species: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MSSA476 [TaxId:282459]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G8R1 (2-187)
      • engineered mutation (17)
    Domains in SCOPe 2.05: d4ai5c_
  • Chain 'D':
    Compound: DNA-3-methyladenine glycosylase I
    Species: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MSSA476 [TaxId:282459]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G8R1 (2-187)
      • expression tag (0-1)
      • engineered mutation (17)
    Domains in SCOPe 2.05: d4ai5d_
  • Chain 'E':
    Compound: DNA-3-methyladenine glycosylase I
    Species: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MSSA476 [TaxId:282459]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G8R1 (2-187)
      • expression tag (0-1)
      • engineered mutation (17)
    Domains in SCOPe 2.05: d4ai5e_
  • Heterogens: ZN, ADK, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ai5A (A:)
gamnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayee
afydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflws
yvngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkd
cpskpkhn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ai5B (B:)
gamnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayee
afydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflws
yvngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkd
cpskpkhn

    Sequence, based on observed residues (ATOM records): (download) 
    >4ai5B (B:)
mnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayeeaf
ydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflwsyv
ngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkdcp
skpkhn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ai5C (C:)
gamnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayee
afydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflws
yvngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkd
cpskpkhn

    Sequence, based on observed residues (ATOM records): (download) 
    >4ai5C (C:)
mnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayeeaf
ydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflwsyv
ngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkdcp
skpkhn

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ai5D (D:)
gamnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayee
afydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflws
yvngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkd
cpskpkhn

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ai5E (E:)
gamnecafgtkdpvylnfhdhvwgqplydskalfkllalesqhaglswltilkkkeayee
afydfepekvaqmtaqdidrlmtfpnivhhrkkleaivnqaqgylkieqaygsfskflws
yvngkpkdlqyehasdritvddtatqlskdlkqygfkflgpvtvfsfleaaglydahlkd
cpskpkhn