PDB entry 3ztr

View 3ztr on RCSB PDB site
Description: Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF RADIATION DAMAGE)
Class: transferase
Keywords: transferase, nucleoside diphosphate kinase, disulfide bridge
Deposited on 2011-07-12, released 2012-03-14
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-05-23, with a file datestamp of 2012-05-18.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.1929
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztra_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrb_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrc_
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrd_
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztre_
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrf_
  • Chain 'G':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrg_
  • Chain 'H':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrh_
  • Chain 'I':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztri_
  • Chain 'J':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrj_
  • Chain 'K':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrk_
  • Chain 'L':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3ztrl_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ztrA (A:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrA (A:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ztrB (B:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrB (B:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ztrC (C:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrC (C:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ztrD (D:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrD (D:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3ztrE (E:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrE (E:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3ztrF (F:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrF (F:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3ztrG (G:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrG (G:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3ztrH (H:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrH (H:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3ztrI (I:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrI (I:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3ztrJ (J:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrJ (J:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >3ztrK (K:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrK (K:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3ztrL (L:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztrL (L:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv