PDB entry 3vyu

View 3vyu on RCSB PDB site
Description: Crystal structure of the HypC-HypD-HypE complex (form II)
Class: metal binding protein/transferase
Keywords: [NiFe] hydrogenase maturation, METAL BINDING PROTEIN-TRANSFERASE complex
Deposited on 2012-10-02, released 2012-11-28
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-07-31, with a file datestamp of 2013-07-26.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.219
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hydrogenase expression/formation protein HypC
    Species: Thermococcus kodakarensis [TaxId:69014]
    Gene: Tk-hypC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3vyua_
  • Chain 'B':
    Compound: Hydrogenase expression/formation protein hypD
    Species: Thermococcus kodakarensis [TaxId:69014]
    Gene: Tk-hypD
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hydrogenase expression/formation protein HypE
    Species: Thermococcus kodakarensis [TaxId:69014]
    Gene: TK1993
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3vyuc1, d3vyuc2
  • Heterogens: SF4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vyuA (A:)
clavpgkvievngpvavvdfggvkrevrldlmpdtkpgdwvivhtgfaiekldekkamei
leawaevekamegf

    Sequence, based on observed residues (ATOM records): (download) 
    >3vyuA (A:)
lavpgkvievngpvavvdfggvkrevrldlmpdtkpgdwvivhtgfaiekldek

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3vyuC (C:)
mgekiklehgaggeimeellrdvilktltlksaggigldalddgatipfgdkhivftidg
htvkplffpggdigrlavsgtvndlavmgaepialansmiigegldmevlkrvlksmdet
arevpvpivtgdtkvvedkiemfvitagigiaehpvsdagakvgdavlvsgtigdhgial
mshregiafetelksdvapiwdvvkavaetigwenihamkdptraglsnalneiarksnv
gilvreadipirpevraasemlgispydvanegkvvmvvareyaeealeamrktekgrna
aiigeviadyrgkvlletgiggkrfmeppegdpvpric

    Sequence, based on observed residues (ATOM records): (download) 
    >3vyuC (C:)
lrdvilktalddgatipfgdkhivftidghtvkplffpggdigrlavsgtvndlavmgae
pialansmiigegldmevlkrvlksmdetarevpvpivtgdtkvvedkiemfvitagigi
aehpvsdagakvgdavlvsgtigdhgialmshregiafetelksdvapiwdvvkavaeti
gwenihamkdptraglsnalneiarksnvgilvreadipirpevraasemlgispydvan
egkvvmvvareyaeealeamrktekgrnaaiigeviadyrgkvlletgiggkrfmeppeg
dpvpr