PDB entry 3vbe

View 3vbe on RCSB PDB site
Description: Crystal structure of beta-cyanoalanine synthase in soybean
Class: transferase
Keywords: beta-cyanoalanine synthase, TRANSFERASE
Deposited on 2012-01-02, released 2012-09-12
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-09-12, with a file datestamp of 2012-09-07.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.169
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-cyanoalnine synthase
    Species: Glycine max [TaxId:3847]
    Gene: GLYMA09G39390, OAS-TL3
    Database cross-references and differences (RAF-indexed):
    • PDB 3VBE
    Domains in SCOPe 2.03: d3vbea_
  • Chain 'B':
    Compound: beta-cyanoalnine synthase
    Species: Glycine max [TaxId:3847]
    Gene: GLYMA09G39390, OAS-TL3
    Database cross-references and differences (RAF-indexed):
    • PDB 3VBE
    Domains in SCOPe 2.03: d3vbeb_
  • Chain 'C':
    Compound: beta-cyanoalnine synthase
    Species: Glycine max [TaxId:3847]
    Gene: GLYMA09G39390, OAS-TL3
    Database cross-references and differences (RAF-indexed):
    • PDB 3VBE
    Domains in SCOPe 2.03: d3vbec_
  • Chain 'D':
    Compound: beta-cyanoalnine synthase
    Species: Glycine max [TaxId:3847]
    Gene: GLYMA09G39390, OAS-TL3
    Database cross-references and differences (RAF-indexed):
    • PDB 3VBE
    Domains in SCOPe 2.03: d3vbed_
  • Heterogens: PLP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vbeA (A:)
mgsshhhhhhssgnlyfqghastnikkhvsqligrtplvylnkvtegcgayvavkqemmq
ptasikdrpayamitdaeeknlitpgkttlieptsgnmgismafmaamkgykmvltmpsy
tslerrvtmrafgaeliltdpakgmggtvkkayellentpnahmlqqfsnpantqvhfet
tgpeiwedtngqvdifvmgigsggtvsgvgqylksknpnvkiygvepsesnvlnggkpgp
hhitgngvgfkpdildldvmekvlevssedavnmarvlalkeglmvgissgantvaalrl
aqlpenkgklivtvhpsfgerylssvlfqelrqeaenmqpvavd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vbeA (A:)
stnikkhvsqligrtplvylnkvtegcgayvavkqemmqptasikdrpayamitdaeekn
litpgkttlieptsgnmgismafmaamkgykmvltmpsytslerrvtmrafgaeliltdp
akgmggtvkkayellentpnahmlqqfsnpantqvhfettgpeiwedtngqvdifvmgig
sggtvsgvgqylksknpnvkiygvepsesnvlnggkpgphhitgngvgfkpdildldvme
kvlevssedavnmarvlalkeglmvgissgantvaalrlaqlpenkgklivtvhpsfger
ylssvlfqelrqeaenm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vbeB (B:)
mgsshhhhhhssgnlyfqghastnikkhvsqligrtplvylnkvtegcgayvavkqemmq
ptasikdrpayamitdaeeknlitpgkttlieptsgnmgismafmaamkgykmvltmpsy
tslerrvtmrafgaeliltdpakgmggtvkkayellentpnahmlqqfsnpantqvhfet
tgpeiwedtngqvdifvmgigsggtvsgvgqylksknpnvkiygvepsesnvlnggkpgp
hhitgngvgfkpdildldvmekvlevssedavnmarvlalkeglmvgissgantvaalrl
aqlpenkgklivtvhpsfgerylssvlfqelrqeaenmqpvavd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vbeB (B:)
tnikkhvsqligrtplvylnkvtegcgayvavkqemmqptasikdrpayamitdaeeknl
itpgkttlieptsgnmgismafmaamkgykmvltmpsytslerrvtmrafgaeliltdpa
kgmggtvkkayellentpnahmlqqfsnpantqvhfettgpeiwedtngqvdifvmgigs
ggtvsgvgqylksknpnvkiygvepsesnvlnggkpgphhitgngvgfkpdildldvmek
vlevssedavnmarvlalkeglmvgissgantvaalrlaqlpenkgklivtvhpsfgery
lssvlfqelrqeaenmqpvav

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3vbeC (C:)
mgsshhhhhhssgnlyfqghastnikkhvsqligrtplvylnkvtegcgayvavkqemmq
ptasikdrpayamitdaeeknlitpgkttlieptsgnmgismafmaamkgykmvltmpsy
tslerrvtmrafgaeliltdpakgmggtvkkayellentpnahmlqqfsnpantqvhfet
tgpeiwedtngqvdifvmgigsggtvsgvgqylksknpnvkiygvepsesnvlnggkpgp
hhitgngvgfkpdildldvmekvlevssedavnmarvlalkeglmvgissgantvaalrl
aqlpenkgklivtvhpsfgerylssvlfqelrqeaenmqpvavd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vbeC (C:)
lyfqghastnikkhvsqligrtplvylnkvtegcgayvavkqemmqptasikdrpayami
tdaeeknlitpgkttlieptsgnmgismafmaamkgykmvltmpsytslerrvtmrafga
eliltdpakgmggtvkkayellentpnahmlqqfsnpantqvhfettgpeiwedtngqvd
ifvmgigsggtvsgvgqylksknpnvkiygvepsesnvlnggkpgphhitgngvgfkpdi
ldldvmekvlevssedavnmarvlalkeglmvgissgantvaalrlaqlpenkgklivtv
hpsfgerylssvlfqelrqeaenmqpvav

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3vbeD (D:)
mgsshhhhhhssgnlyfqghastnikkhvsqligrtplvylnkvtegcgayvavkqemmq
ptasikdrpayamitdaeeknlitpgkttlieptsgnmgismafmaamkgykmvltmpsy
tslerrvtmrafgaeliltdpakgmggtvkkayellentpnahmlqqfsnpantqvhfet
tgpeiwedtngqvdifvmgigsggtvsgvgqylksknpnvkiygvepsesnvlnggkpgp
hhitgngvgfkpdildldvmekvlevssedavnmarvlalkeglmvgissgantvaalrl
aqlpenkgklivtvhpsfgerylssvlfqelrqeaenmqpvavd

    Sequence, based on observed residues (ATOM records): (download) 
    >3vbeD (D:)
stnikkhvsqligrtplvylnkvtegcgayvavkqemmqptasikdrpayamitdaeekn
litpgkttlieptsgnmgismafmaamkgykmvltmpsytslerrvtmrafgaeliltdp
akgmggtvkkayellentpnahmlqqfsnpantqvhfettgpeiwedtngqvdifvmgig
sggtvsgvgqylksknpnvkiygvepsesnvlnggkpgphhitgngvgfkpdildldvme
kvlevssedavnmarvlalkeglmvgissgantvaalrlaqlpenkgklivtvhpsfger
ylssvlfqelrqeaenm