PDB entry 3uld

View 3uld on RCSB PDB site
Description: High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutant
Class: hydrolase/RNA/DNA
Keywords: RNase H, DNA/RNA hybrid, ENDONUCLEASE, HYDROLASE, MAGNESIUM, RIBONUCLEASE H, HYDROLASE-RNA-DNA complex
Deposited on 2011-11-10, released 2012-11-14
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-11-14, with a file datestamp of 2012-11-09.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.196
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease H
    Species: Bacillus halodurans [TaxId:86665]
    Gene: rnhA, BH0863
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KEI9
      • engineered mutation (77)
    Domains in SCOPe 2.04: d3ulda_
  • Chain 'B':
    Compound: RNA (5'-r(*up*cp*gp*ap*cp*a)-3')
  • Chain 'C':
    Compound: DNA (5'-d(*ap*tp*gp*tp*cp*(pgn))-3')
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3uldA (A:)
gshmakeeiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaiv
hglrylkernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthty
etpilkwqtdkwgeikadygrk

    Sequence, based on observed residues (ATOM records): (download) 
    >3uldA (A:)
eeiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaivhglryl
kernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthtyetpilk
wqtdkwgeikady

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.