PDB entry 3tkr

View 3tkr on RCSB PDB site
Description: Crystal structure of full-length human peroxiredoxin 4 with T118E mutation
Class: oxidoreductase
Keywords: Trx fold, peroxiredoxin, OXIDOREDUCTASE
Deposited on 2011-08-28, released 2011-10-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.152
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkra_
  • Chain 'B':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrb_
  • Chain 'C':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrc_
  • Chain 'D':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrd_
  • Chain 'E':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkre_
  • Chain 'F':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrf_
  • Chain 'G':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrg_
  • Chain 'H':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrh_
  • Chain 'I':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkri_
  • Chain 'J':
    Compound: Peroxiredoxin-4
    Species: Homo sapiens [TaxId:9606]
    Gene: PRDX4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13162 (Start-245)
      • engineered mutation (129)
    Domains in SCOPe 2.07: d3tkrj_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3tkrA (A:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrA (A:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3tkrB (B:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrB (B:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3tkrC (C:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrC (C:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3tkrD (D:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrD (D:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3tkrE (E:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrE (E:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3tkrF (F:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrF (F:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3tkrG (G:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrG (G:)
    skakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrle
    efrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsg
    htlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgseti
    ipdpagklkyfdkln
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3tkrH (H:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrH (H:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3tkrI (I:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrI (I:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3tkrJ (J:)
    mrgshhhhhhgsweteerprtreeechfyaggqvypgeasrvsvadhslhlskakiskpa
    pywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdrleefrsintev
    vacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyledsghtlrglfii
    ddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgsetiipdpagklk
    yfdkln
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tkrJ (J:)
    hlskakiskpapywegtavidgefkelkltdyrgkylvfffypldftfvcpteiiafgdr
    leefrsintevvacsvdsqfehlawintprrqgglgpiripllsdlthqiskdygvyled
    sghtlrglfiiddkgilrqitlndlpvgrsvdetlrlvqafqytdkhgevcpagwkpgse
    tiipdpagklkyfdkln