PDB entry 3qq1

View 3qq1 on RCSB PDB site
Description: Crystal structure of a double mutant [A58P, DEL(N59)] of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Class: transferase
Keywords: manno-octulosonate, synthase, lipopolysaccharide, kdop, kdo8 kdops, kdo8ps, tim barrel, biosynthesis, transferase, lyase, lipopolysaccharide biosynthesis
Deposited on 2011-02-14, released 2011-04-13
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-04-13, with a file datestamp of 2011-04-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.214
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
    Species: Neisseria meningitidis [TaxId:122586]
    Gene: kdsA, NMB1283
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZ55 (0-End)
      • engineered mutation (57)
    Domains in SCOPe 2.02: d3qq1a_
  • Chain 'B':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
    Species: Neisseria meningitidis [TaxId:122586]
    Gene: kdsA, NMB1283
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZ55 (0-End)
      • engineered mutation (57)
    Domains in SCOPe 2.02: d3qq1b_
  • Chain 'C':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
    Species: Neisseria meningitidis [TaxId:122586]
    Gene: kdsA, NMB1283
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZ55 (0-End)
      • engineered mutation (57)
    Domains in SCOPe 2.02: d3qq1c_
  • Chain 'D':
    Compound: 2-dehydro-3-deoxyphosphooctonate aldolase
    Species: Neisseria meningitidis [TaxId:122586]
    Gene: kdsA, NMB1283
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JZ55 (0-End)
      • engineered mutation (57)
    Domains in SCOPe 2.02: d3qq1d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3qq1A (A:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpdp
klakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >3qq1A (A:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqgrraqaldlalagmatrlaglflelhlledflirikald
dliksqpil

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3qq1B (B:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpdp
klakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >3qq1B (B:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqgrraqaldlalagmatrlaglfleshlledflirikald
dliksqpilti

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3qq1C (C:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpdp
klakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >3qq1C (C:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqraqaldlalagmatrlaglflesplhlledflirikald
dliksqpil

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3qq1D (D:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqtrdagsaasggrraqaldlalagmatrlaglfleshpdp
klakcdgpsalplhlledflirikalddliksqpiltie

    Sequence, based on observed residues (ATOM records): (download) 
    >3qq1D (D:)
mdikinditlgnnspfvlfgginvlesldstlqtcahyvevtrklgipyifkasfdkprs
sihsyrgvgleeglkifekvkaefgipvitdvhephqcqpvaevcdviqlpaflarqtdl
vvamaktgnvvnikkpqflspsqmknivekfheagngklilcergssfgydnlvvdmlgf
gvmkqtcgnlpvifdvthslqtaqaldlalagmatrlaglflesalplhlledflirika
lddliksqpil