PDB entry 3pkz

View 3pkz on RCSB PDB site
Description: Structural basis for catalytic activation of a serine recombinase
Class: recombination
Keywords: small serine recombinase, resolvase, DNA, RECOMBINATION
Deposited on 2010-11-12, released 2011-06-15
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.209
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkza_
  • Chain 'B':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzb_
  • Chain 'C':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzc_
  • Chain 'D':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzd_
  • Chain 'E':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkze_
  • Chain 'F':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzf_
  • Chain 'G':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzg_
  • Chain 'H':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzh_
  • Chain 'I':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzi_
  • Chain 'J':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzj_
  • Chain 'K':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzk_
  • Chain 'L':
    Compound: Recombinase Sin
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: sin, SAP013A_018, SAP095A_006, SAP096A_020
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2J612 (0-123)
      • engineered mutation (53)
      • engineered mutation (114)
    Domains in SCOPe 2.05: d3pkzl_
  • Heterogens: SO4, EDO, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzA (A:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzB (B:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzC (C:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzD (D:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzE (E:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzF (F:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3pkzG (G:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3pkzG (G:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmevignplldkfmkdliirilamvse
qe

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzH (H:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzI (I:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzJ (J:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzK (K:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pkzL (L:)
miigyarvssldqnlerqlenlktfgaekiftekqsgksienrpilqkalnfvemgdrfi
vesidrlgrnynevihtvnylkdkevqlmitslpmmnevignplldkfmkdliirilamv
seqe