PDB entry 3ped

View 3ped on RCSB PDB site
Description: Siderocalin Recognitin of Carboxymycobactins: Interference by the immune system in intracellular iron acquisition by Mycobacteria tuberculosis
Class: antimicrobial protein
Keywords: 8-stranded anti-parallel beta barrel, Siderocalin, Siderophore binding, ANTIMICROBIAL PROTEIN
Deposited on 2010-10-25, released 2011-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.208
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188 (Start-177)
      • engineered mutation (86)
    Domains in SCOPe 2.08: d3peda_
  • Chain 'B':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188
      • engineered mutation (86)
    Domains in SCOPe 2.08: d3pedb_
  • Chain 'C':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188
      • engineered mutation (86)
    Domains in SCOPe 2.08: d3pedc_
  • Heterogens: FE, ZYF, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pedA (A:)
qdstsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelke
dksynvtsvlfrkkkcdywirtfvpgsqpgeftlgniksypgltsylvrvvstnynqham
vffkkvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3pedA (A:)
dstsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelked
ksynvtsvlfrkkkcdywirtfvpgsqpgeftlgniksypgltsylvrvvstnynqhamv
ffkkvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pedB (B:)
qdstsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelke
dksynvtsvlfrkkkcdywirtfvpgsqpgeftlgniksypgltsylvrvvstnynqham
vffkkvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3pedB (B:)
sdlipapplskvplqqnfqdnqfqgkwyvvglagnailrekdpqkmyatiyelkedksyn
vtsvlfrkkkcdywirtfvpgsqpgeftlgniksypgltsylvrvvstnynqhamvffkk
vsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcid

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pedC (C:)
qdstsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelke
dksynvtsvlfrkkkcdywirtfvpgsqpgeftlgniksypgltsylvrvvstnynqham
vffkkvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3pedC (C:)
dlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelkedksyn
vtsvlfrkkkcdywirtfvpgsqpgeftlgniksypgltsylvrvvstnynqhamvffkk
vsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcid