PDB entry 3p39

View 3p39 on RCSB PDB site
Description: Crystal structure of the NS1 effector domain W182A mutant from influenza A/Vietnam/1203/2004 (H5N1) virus
Class: viral protein
Keywords: Viral protein
Deposited on 2010-10-04, released 2011-10-05
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 3.14 Å
R-factor: 0.208
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:680789]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1LP63
      • engineered mutation (113)
    Domains in SCOPe 2.04: d3p39a_
  • Chain 'B':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:680789]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1LP63
      • engineered mutation (113)
    Domains in SCOPe 2.04: d3p39b_
  • Chain 'C':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:680789]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1LP63
      • engineered mutation (113)
    Domains in SCOPe 2.04: d3p39c_
  • Chain 'D':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:680789]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1LP63
      • engineered mutation (113)
    Domains in SCOPe 2.04: d3p39d_
  • Chain 'E':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:680789]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1LP63
      • engineered mutation (113)
    Domains in SCOPe 2.04: d3p39e_
  • Chain 'F':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:680789]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1LP63
      • engineered mutation (113)
    Domains in SCOPe 2.04: d3p39f_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3p39A (A:)
gplgsdkalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkan
fsvifdrletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvr
vtetiqrfawrnsdedgrlplppnqkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3p39A (A:)
kmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkanfsvifdrle
tlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvrvtetiqrfa
wrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3p39B (B:)
gplgsdkalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkan
fsvifdrletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvr
vtetiqrfawrnsdedgrlplppnqkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3p39B (B:)
kmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkanfsvifdrle
tlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvrvtetiqrfa
wrn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3p39C (C:)
gplgsdkalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkan
fsvifdrletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvr
vtetiqrfawrnsdedgrlplppnqkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3p39C (C:)
kmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkanfsvifdrle
tlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvrvtetiqrfa
wrn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3p39D (D:)
gplgsdkalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkan
fsvifdrletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvr
vtetiqrfawrnsdedgrlplppnqkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3p39D (D:)
kalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkanfsvifd
rletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvrvtetiq
rfawrn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3p39E (E:)
gplgsdkalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkan
fsvifdrletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvr
vtetiqrfawrnsdedgrlplppnqkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3p39E (E:)
kmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkanfsvifdrle
tlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvrvtetiqrfa
wrn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3p39F (F:)
gplgsdkalkmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkan
fsvifdrletlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvr
vtetiqrfawrnsdedgrlplppnqkr

    Sequence, based on observed residues (ATOM records): (download) 
    >3p39F (F:)
kmpasryltdmtleemsrdwfmlmpkqkvagslcikmdqaimdktiilkanfsvifdrle
tlillrafteegaivgeisplpslpghtgedvknaigvliggleandntvrvtetiqrfa
wrn