PDB entry 3ohb

View 3ohb on RCSB PDB site
Description: Yeast DNA polymerase eta extending from an 8-oxoG lesion
Class: transferase/DNA
Keywords: Protein-DNA complex, TRANSFERASE/DNA, Nucleotidyltransferase, DNA-directed DNA Polymerase, DNA repair, DNA replication, DNA binding, nucleotide binding, metal binding, magnesium binding, Nucleus, TRANSFERASE-DNA complex
Deposited on 2010-08-17, released 2010-12-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA Polymerase ETA
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: DBH1, RAD30, YDR419W
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q04049 (7-End)
      • expression tag (4-6)
      • engineered mutation (146)
      • engineered mutation (150)
    Domains in SCOPe 2.07: d3ohba1, d3ohba2, d3ohba3
  • Chain 'P':
    Compound: 5'-d(*gp*tp*cp*cp*tp*cp*cp*cp*cp*tp*(doc))-3'
  • Chain 'T':
    Compound: 5'-d(*tp*ap*ap*tp*gp*(8og)p*ap*gp*gp*gp*gp*ap*gp*gp*ap*c)-3'
  • Heterogens: DCP, MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ohbA (A:)
gpggdphmskftwkeliqlgspskayesslaciahidmnaffaqveqmrcglskedpvvc
vqwnsiiavsyaarkygisrmdtiqealkkcsnlipihtavfkkgedfwqyhdgcgswvq
dpakqisvedhkvslepyrresrkalaifkwacdlverasidevfldlgricfnmlmfdn
eyeltgdlklkdalsnireafiggnydinshlplipekikslkfegdvfnpegrdlitdw
ddvilalgsqvckgirdsikdilgyttscglsstknvcklasnykkpdaqtivkndclld
fldcgkfeitsfwtlggvlgkelidvldlphensikhiretwpdnagqlkefldakvkqs
dydrstsnidplktadlaeklfklsrgryglplssrpvvksmmsnknlrgkscnsivdci
swlevfcaeltsriqdleqeynkiviprtvsislktksyevyrksgpvaykginfqshel
lkvgikfvtdldikgknksyypltklsmtitnfdiidlqk

    Sequence, based on observed residues (ATOM records): (download) 
    >3ohbA (A:)
dphmskftwkeliqlgspskayesslaciahidmnaffaqveqmrcglskedpvvcvqwn
siiavsyaarkygisrmdtiqealkkcsnlipihtavfkkgedfwqyhdgcgswvqdpak
qisvedhkvslepyrresrkalaifkwacdlverasidevfldlgricfnmlmfdneyel
tgdlklkdalsnireafiggnydinshlplipekikslkfegdvfnpegrdlitdwddvi
lalgsqvckgirdsikdilgyttscglsstknvcklasnykkpdaqtivkndclldfldc
gkfeitsfwtlggvlgkelidvldlphensikhiretwpdnagqlkefldakvkqsdydr
stsnidplktadlaeklfklsrgryglplssrpvvksmmsnknlrgkscnsivdciswle
vfcaeltsriqdleqeynkiviprtvsislktksyevyrksgpvaykginfqshellkvg
ikfvtdldikgknksyypltklsmtitnfdiidlq

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.